def test_train_from_ints( self ):
out = StringIO()
rp_train.run( open( "test_data/reg.ints" ),
open( "test_data/ar.ints" ),
out,
None,
None,
None,
2,
'standard' )
expected = open( "test_data/compare/hm.5a_scoreMatrix.txt" )
compare_floats( out, expected, 2 )
def test_train_from_maf( self ):
out = StringIO()
mapping = rp.mapping.alignment_mapping_from_file( open( "test_data/hm.5a.mapping.txt" ) )
rp_train.run( open( "test_data/reg.maf" ),
open( "test_data/ar.maf" ),
out,
'maf',
mapping,
None,
2,
'standard' )
expected = open( "test_data/compare/hm.5a_scoreMatrix.txt" )
compare_floats( out, expected, 2 )
