def test_train_from_ints( self ): out = StringIO() rp_train.run( open( "test_data/reg.ints" ), open( "test_data/ar.ints" ), out, None, None, None, 2, 'standard' ) expected = open( "test_data/compare/hm.5a_scoreMatrix.txt" ) compare_floats( out, expected, 2 )
def test_train_from_maf( self ): out = StringIO() mapping = rp.mapping.alignment_mapping_from_file( open( "test_data/hm.5a.mapping.txt" ) ) rp_train.run( open( "test_data/reg.maf" ), open( "test_data/ar.maf" ), out, 'maf', mapping, None, 2, 'standard' ) expected = open( "test_data/compare/hm.5a_scoreMatrix.txt" ) compare_floats( out, expected, 2 )