def typefmt(tp, redirects, nbsp=False):
if isinstance(tp, list):
if nbsp and len(tp) <= 3:
return " | ".join([typefmt(n, redirects) for n in tp])
else:
return " | ".join([typefmt(n, redirects) for n in tp])
if isinstance(tp, dict):
if tp["type"] == "https://w3id.org/cwl/salad#array":
return "array<%s>" % (typefmt(
tp["items"], redirects, nbsp=True))
if tp["type"] in ("https://w3id.org/cwl/salad#record",
"https://w3id.org/cwl/salad#enum"):
frg = schema.avro_name(tp["name"])
if tp["name"] in redirects:
return """<a href="%s">%s</a>""" % (redirects[tp["name"]], frg)
else:
return """<a href="#%s">%s</a>""" % (to_id(frg), frg)
if isinstance(tp["type"], dict):
return typefmt(tp["type"], redirects)
else:
if str(tp) in redirects:
return """<a href="%s">%s</a>""" % (redirects[tp], redirects[tp])
elif str(tp) in basicTypes:
return """<a href="#CWLType">%s</a>""" % schema.avro_name(str(tp))
else:
_, frg = urlparse.urldefrag(tp)
if frg:
tp = frg
return """<a href="#%s">%s</a>""" % (to_id(tp), tp)
def typefmt(self, tp, redirects, nbsp=False):
global primitiveType
if isinstance(tp, list):
if nbsp and len(tp) <= 3:
return " | ".join([self.typefmt(n, redirects) for n in tp])
else:
return " | ".join([self.typefmt(n, redirects) for n in tp])
if isinstance(tp, dict):
if tp["type"] == "https://w3id.org/cwl/salad#array":
return "array<%s>" % (self.typefmt(tp["items"], redirects, nbsp=True))
if tp["type"] in ("https://w3id.org/cwl/salad#record", "https://w3id.org/cwl/salad#enum"):
frg = schema.avro_name(tp["name"])
if tp["name"] in redirects:
return """<a href="%s">%s</a>""" % (redirects[tp["name"]], frg)
elif tp["name"] in self.typemap:
return """<a href="#%s">%s</a>""" % (to_id(frg), frg)
else:
return frg
if isinstance(tp["type"], dict):
return self.typefmt(tp["type"], redirects)
else:
if str(tp) in redirects:
return """<a href="%s">%s</a>""" % (redirects[tp], redirects[tp])
elif str(tp) in basicTypes:
return """<a href="%s">%s</a>""" % (primitiveType, schema.avro_name(str(tp)))
else:
_, frg = urlparse.urldefrag(tp)
if frg:
tp = frg
return """<a href="#%s">%s</a>""" % (to_id(tp), tp)
def typefmt(tp, nbsp=False):
if isinstance(tp, list):
if nbsp and len(tp) <= 3:
return " | ".join([typefmt(n) for n in tp])
else:
return " | ".join([typefmt(n) for n in tp])
if isinstance(tp, dict):
if tp["type"] == "https://w3id.org/cwl/salad#array":
return "array<%s>" % (typefmt(tp["items"], True))
if tp["type"] in ("https://w3id.org/cwl/salad#record", "https://w3id.org/cwl/salad#enum"):
frg = schema.avro_name(tp["name"])
return """<a href="#%s">%s</a>""" % (to_id(frg), frg)
if isinstance(tp["type"], dict):
return typefmt(tp["type"])
else:
if str(tp) in (
"https://w3id.org/cwl/salad#null",
"http://www.w3.org/2001/XMLSchema#boolean",
"http://www.w3.org/2001/XMLSchema#int",
"http://www.w3.org/2001/XMLSchema#long",
"http://www.w3.org/2001/XMLSchema#float",
"http://www.w3.org/2001/XMLSchema#double",
"http://www.w3.org/2001/XMLSchema#string",
"https://w3id.org/cwl/salad#record",
"https://w3id.org/cwl/salad#enum",
"https://w3id.org/cwl/salad#array",
):
return """<a href="#CWLType">%s</a>""" % schema.avro_name(str(tp))
else:
_, frg = urlparse.urldefrag(tp)
if frg:
tp = frg
return """<a href="#%s">%s</a>""" % (to_id(tp), tp)
def render_type(self, f, depth):
if f["name"] in self.rendered or f["name"] in self.redirects:
return
self.rendered.add(f["name"])
if "doc" not in f:
f["doc"] = ""
f["type"] = copy.deepcopy(f)
f["doc"] = ""
f = f["type"]
if "doc" not in f:
f["doc"] = ""
def extendsfrom(item, ex):
if "extends" in item:
for e in aslist(item["extends"]):
ex.insert(0, self.typemap[e])
extendsfrom(self.typemap[e], ex)
ex = [f]
extendsfrom(f, ex)
enumDesc = {}
if f["type"] == "enum" and isinstance(f["doc"], list):
for e in ex:
for i in e["doc"]:
idx = i.find(":")
if idx > -1:
enumDesc[i[:idx]] = i[idx + 1:]
e["doc"] = [
i for i in e["doc"]
if i.find(":") == -1 or i.find(" ") < i.find(":")
]
f["doc"] = fix_doc(f["doc"])
if f["type"] == "record":
for field in f.get("fields", []):
if "doc" not in field:
field["doc"] = ""
if f["type"] != "documentation":
lines = []
for l in f["doc"].splitlines():
if len(l) > 0 and l[0] == "#":
l = ("#" * depth) + l
lines.append(l)
f["doc"] = "\n".join(lines)
_, frg = urlparse.urldefrag(f["name"])
num = self.toc.add_entry(depth, frg)
doc = "## %s %s\n" % (num, frg)
else:
doc = ""
if self.title is None:
self.title = f["doc"][0:f["doc"].index("\n")][2:]
if f["type"] == "documentation":
f["doc"] = number_headings(self.toc, f["doc"])
#if "extends" in f:
# doc += "\n\nExtends "
# doc += ", ".join([" %s" % linkto(ex) for ex in aslist(f["extends"])])
#if f["name"] in self.subs:
# doc += "\n\nExtended by"
# doc += ", ".join([" %s" % linkto(s) for s in self.subs[f["name"]]])
#if f["name"] in self.uses:
# doc += "\n\nReferenced by"
# doc += ", ".join([" [%s.%s](#%s)" % (s[0], s[1], to_id(s[0])) for s in self.uses[f["name"]]])
doc = doc + "\n\n" + f["doc"]
doc = mistune.markdown(doc, renderer=MyRenderer())
if f["type"] == "record":
doc += "<h3>Fields</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>field</th><th>type</th><th>required</th><th>description</th></tr>"
required = []
optional = []
for i in f.get("fields", []):
tp = i["type"]
if isinstance(
tp,
list) and tp[0] == "https://w3id.org/cwl/salad#null":
opt = False
tp = tp[1:]
else:
opt = True
desc = i["doc"]
#if "inherited_from" in i:
# desc = "%s _Inherited from %s_" % (desc, linkto(i["inherited_from"]))
frg = schema.avro_name(i["name"])
tr = "<td><code>%s</code></td><td>%s</td><td>%s</td><td>%s</td>" % (
frg, self.typefmt(
tp, self.redirects), opt, mistune.markdown(desc))
if opt:
required.append(tr)
else:
optional.append(tr)
for i in required + optional:
doc += "<tr>" + i + "</tr>"
doc += """</table>"""
elif f["type"] == "enum":
doc += "<h3>Symbols</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>symbol</th><th>description</th></tr>"
for e in ex:
for i in e.get("symbols", []):
doc += "<tr>"
frg = schema.avro_name(i)
doc += "<td><code>%s</code></td><td>%s</td>" % (
frg, enumDesc.get(frg, ""))
doc += "</tr>"
doc += """</table>"""
f["doc"] = doc
self.typedoc.write(f["doc"])
subs = self.docParent.get(f["name"], []) + self.record_refs.get(
f["name"], [])
if len(subs) == 1:
self.render_type(self.typemap[subs[0]], depth)
else:
for s in subs:
self.render_type(self.typemap[s], depth + 1)
for s in self.docAfter.get(f["name"], []):
self.render_type(self.typemap[s], depth)
def render_type(self, f, depth):
if f["name"] in self.rendered or f["name"] in self.redirects:
return
self.rendered.add(f["name"])
if "doc" not in f:
f["doc"] = ""
f["type"] = copy.deepcopy(f)
f["doc"] = ""
f = f["type"]
if "doc" not in f:
f["doc"] = ""
f["doc"] = fix_doc(f["doc"])
if f["type"] == "record":
for field in f.get("fields", []):
if "doc" not in field:
field["doc"] = ""
if f["type"] != "documentation":
lines = []
for l in f["doc"].splitlines():
if len(l) > 0 and l[0] == "#":
l = ("#" * depth) + l
lines.append(l)
f["doc"] = "\n".join(lines)
_, frg = urlparse.urldefrag(f["name"])
num = self.toc.add_entry(depth, frg)
doc = "## %s %s\n" % (num, frg)
else:
doc = ""
if self.title is None:
self.title = f["doc"][0:f["doc"].index("\n")][2:]
if f["type"] == "documentation":
f["doc"] = number_headings(self.toc, f["doc"])
#if "extends" in f:
# doc += "\n\nExtends "
# doc += ", ".join([" %s" % linkto(ex) for ex in aslist(f["extends"])])
#if f["name"] in self.subs:
# doc += "\n\nExtended by"
# doc += ", ".join([" %s" % linkto(s) for s in self.subs[f["name"]]])
#if f["name"] in self.uses:
# doc += "\n\nReferenced by"
# doc += ", ".join([" [%s.%s](#%s)" % (s[0], s[1], to_id(s[0])) for s in self.uses[f["name"]]])
doc = doc + "\n\n" + f["doc"]
doc = mistune.markdown(doc, renderer=MyRenderer())
if f["type"] == "record":
doc += "<h3>Fields</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>field</th><th>type</th><th>required</th><th>description</th></tr>"
for i in f.get("fields", []):
doc += "<tr>"
tp = i["type"]
if isinstance(tp, list) and tp[0] == "null":
opt = False
tp = tp[1:]
else:
opt = True
desc = i["doc"]
#if "inherited_from" in i:
# desc = "%s _Inherited from %s_" % (desc, linkto(i["inherited_from"]))
frg = schema.avro_name(i["name"])
doc += "<td><code>%s</code></td><td>%s</td><td>%s</td><td>%s</td>" % (
frg, typefmt(tp,
self.redirects), opt, mistune.markdown(desc))
doc += "</tr>"
doc += """</table>"""
f["doc"] = doc
self.typedoc.write(f["doc"])
subs = self.docParent.get(f["name"], []) + self.record_refs.get(
f["name"], [])
if len(subs) == 1:
self.render_type(self.typemap[subs[0]], depth)
else:
for s in subs:
self.render_type(self.typemap[s], depth + 1)
for s in self.docAfter.get(f["name"], []):
self.render_type(self.typemap[s], depth)
def render_type(self, f, depth):
if f["name"] in self.rendered or f["name"] in self.redirects:
return
self.rendered.add(f["name"])
if "doc" not in f:
f["doc"] = ""
f["type"] = copy.deepcopy(f)
f["doc"] = ""
f = f["type"]
if "doc" not in f:
f["doc"] = ""
def extendsfrom(item, ex):
if "extends" in item:
for e in aslist(item["extends"]):
ex.insert(0, self.typemap[e])
extendsfrom(self.typemap[e], ex)
ex = [f]
extendsfrom(f, ex)
enumDesc = {}
if f["type"] == "enum" and isinstance(f["doc"], list):
for e in ex:
for i in e["doc"]:
idx = i.find(":")
if idx > -1:
enumDesc[i[:idx]] = i[idx+1:]
e["doc"] = [i for i in e["doc"] if i.find(":") == -1 or i.find(" ") < i.find(":")]
f["doc"] = fix_doc(f["doc"])
if f["type"] == "record":
for field in f.get("fields", []):
if "doc" not in field:
field["doc"] = ""
if f["type"] != "documentation":
lines = []
for l in f["doc"].splitlines():
if len(l) > 0 and l[0] == "#":
l = ("#" * depth) + l
lines.append(l)
f["doc"] = "\n".join(lines)
_, frg = urlparse.urldefrag(f["name"])
num = self.toc.add_entry(depth, frg)
doc = "## %s %s\n" % (num, frg)
else:
doc = ""
if self.title is None:
self.title = f["doc"][0:f["doc"].index("\n")][2:]
if f["type"] == "documentation":
f["doc"] = number_headings(self.toc, f["doc"])
#if "extends" in f:
# doc += "\n\nExtends "
# doc += ", ".join([" %s" % linkto(ex) for ex in aslist(f["extends"])])
#if f["name"] in self.subs:
# doc += "\n\nExtended by"
# doc += ", ".join([" %s" % linkto(s) for s in self.subs[f["name"]]])
#if f["name"] in self.uses:
# doc += "\n\nReferenced by"
# doc += ", ".join([" [%s.%s](#%s)" % (s[0], s[1], to_id(s[0])) for s in self.uses[f["name"]]])
doc = doc + "\n\n" + f["doc"]
doc = mistune.markdown(doc, renderer=MyRenderer())
if f["type"] == "record":
doc += "<h3>Fields</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>field</th><th>type</th><th>required</th><th>description</th></tr>"
required = []
optional = []
for i in f.get("fields", []):
tp = i["type"]
if isinstance(tp, list) and tp[0] == "https://w3id.org/cwl/salad#null":
opt = False
tp = tp[1:]
else:
opt = True
desc = i["doc"]
#if "inherited_from" in i:
# desc = "%s _Inherited from %s_" % (desc, linkto(i["inherited_from"]))
frg = schema.avro_name(i["name"])
tr = "<td><code>%s</code></td><td>%s</td><td>%s</td><td>%s</td>" % (frg, self.typefmt(tp, self.redirects), opt, mistune.markdown(desc))
if opt:
required.append(tr)
else:
optional.append(tr)
for i in required+optional:
doc += "<tr>" + i + "</tr>"
doc += """</table>"""
elif f["type"] == "enum":
doc += "<h3>Symbols</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>symbol</th><th>description</th></tr>"
for e in ex:
for i in e.get("symbols", []):
doc += "<tr>"
frg = schema.avro_name(i)
doc += "<td><code>%s</code></td><td>%s</td>" % (frg, enumDesc.get(frg, ""))
doc += "</tr>"
doc += """</table>"""
f["doc"] = doc
self.typedoc.write(f["doc"])
subs = self.docParent.get(f["name"], []) + self.record_refs.get(f["name"], [])
if len(subs) == 1:
self.render_type(self.typemap[subs[0]], depth)
else:
for s in subs:
self.render_type(self.typemap[s], depth+1)
for s in self.docAfter.get(f["name"], []):
self.render_type(self.typemap[s], depth)
def render_type(self, f, depth):
if f["name"] in self.rendered or f["name"] in self.redirects:
return
self.rendered.add(f["name"])
if "doc" not in f:
f["doc"] = ""
f["type"] = copy.deepcopy(f)
f["doc"] = ""
f = f["type"]
if "doc" not in f:
f["doc"] = ""
f["doc"] = fix_doc(f["doc"])
if f["type"] == "record":
for field in f.get("fields", []):
if "doc" not in field:
field["doc"] = ""
if f["type"] != "documentation":
lines = []
for l in f["doc"].splitlines():
if len(l) > 0 and l[0] == "#":
l = ("#" * depth) + l
lines.append(l)
f["doc"] = "\n".join(lines)
_, frg = urlparse.urldefrag(f["name"])
num = self.toc.add_entry(depth, frg)
doc = "## %s %s\n" % (num, frg)
else:
doc = ""
if self.title is None:
self.title = f["doc"][0:f["doc"].index("\n")][2:]
if f["type"] == "documentation":
f["doc"] = number_headings(self.toc, f["doc"])
#if "extends" in f:
# doc += "\n\nExtends "
# doc += ", ".join([" %s" % linkto(ex) for ex in aslist(f["extends"])])
#if f["name"] in self.subs:
# doc += "\n\nExtended by"
# doc += ", ".join([" %s" % linkto(s) for s in self.subs[f["name"]]])
#if f["name"] in self.uses:
# doc += "\n\nReferenced by"
# doc += ", ".join([" [%s.%s](#%s)" % (s[0], s[1], to_id(s[0])) for s in self.uses[f["name"]]])
doc = doc + "\n\n" + f["doc"]
doc = mistune.markdown(doc, renderer=MyRenderer())
if f["type"] == "record":
doc += "<h3>Fields</h3>"
doc += """<table class="table table-striped">"""
doc += "<tr><th>field</th><th>type</th><th>required</th><th>description</th></tr>"
for i in f.get("fields", []):
doc += "<tr>"
tp = i["type"]
if isinstance(tp, list) and tp[0] == "null":
opt = False
tp = tp[1:]
else:
opt = True
desc = i["doc"]
#if "inherited_from" in i:
# desc = "%s _Inherited from %s_" % (desc, linkto(i["inherited_from"]))
frg = schema.avro_name(i["name"])
doc += "<td><code>%s</code></td><td>%s</td><td>%s</td><td>%s</td>" % (frg, typefmt(tp, self.redirects), opt, mistune.markdown(desc))
doc += "</tr>"
doc += """</table>"""
f["doc"] = doc
self.typedoc.write(f["doc"])
subs = self.docParent.get(f["name"], []) + self.record_refs.get(f["name"], [])
if len(subs) == 1:
self.render_type(self.typemap[subs[0]], depth)
else:
for s in subs:
self.render_type(self.typemap[s], depth+1)
for s in self.docAfter.get(f["name"], []):
self.render_type(self.typemap[s], depth)