def test_get_end_snv():
alt = "T"
category = "snv"
pos = snvend = 879537
end = get_end(pos, alt, category, snvend, svend=None, svlen=None)
assert end == snvend
def test_get_end_snv():
alt = 'T'
category = 'snv'
pos = snvend = 879537
end = get_end(pos, alt, category, snvend, svend=None, svlen=None)
assert end == snvend
def test_get_end_snv():
alt = 'T'
category = 'snv'
pos = snvend = 879537
end = get_end(pos, alt, category, snvend, svend=None, svlen=None)
assert end == snvend
def test_get_end_indel():
alt = "C"
category = "indel"
pos = 302253
snvend = 302265
end = get_end(pos, alt, category, snvend, svend=None, svlen=None)
assert end == snvend
def test_get_end_indel():
alt = 'C'
category = 'indel'
pos = 302253
snvend = 302265
end = get_end(pos, alt, category, snvend, svend=None, svlen=None)
assert end == snvend
def test_get_end_tiddit_translocation():
## GIVEN a translocation
alt = "N[hs37d5:12060532["
category = "sv"
pos = 724779
## WHEN parsing the end coordinate
end = get_end(pos, alt, category, snvend=None, svend=None, svlen=None)
## THEN assert that the end is the same as en coordinate described in alt field
assert end == 12060532
def test_get_end_tiddit_translocation():
## GIVEN a translocation
alt = 'N[hs37d5:12060532['
category = 'sv'
pos = 724779
## WHEN parsing the end coordinate
end = get_end(pos, alt, category, snvend=None, svend=None, svlen=None)
## THEN assert that the end is the same as en coordinate described in alt field
assert end == 12060532
def test_get_end_deletion():
## GIVEN a translocation
alt = "<DEL>"
category = "sv"
pos = 869314
svend = 870246
svlen = None
## WHEN parsing the end coordinate
end = get_end(pos, alt, category, snvend=None, svend=svend, svlen=svlen)
## THEN assert that the end is the same as en coordinate described in alt field
assert end == svend
def test_get_end_deletion():
## GIVEN a translocation
alt = '<DEL>'
category = 'sv'
pos = 869314
svend = 870246
svlen = None
## WHEN parsing the end coordinate
end = get_end(pos, alt, category, snvend=None, svend=svend, svlen=svlen)
## THEN assert that the end is the same as en coordinate described in alt field
assert end == svend
