def test_get_end_snv(): alt = "T" category = "snv" pos = snvend = 879537 end = get_end(pos, alt, category, snvend, svend=None, svlen=None) assert end == snvend
def test_get_end_snv(): alt = 'T' category = 'snv' pos = snvend = 879537 end = get_end(pos, alt, category, snvend, svend=None, svlen=None) assert end == snvend
def test_get_end_indel(): alt = "C" category = "indel" pos = 302253 snvend = 302265 end = get_end(pos, alt, category, snvend, svend=None, svlen=None) assert end == snvend
def test_get_end_indel(): alt = 'C' category = 'indel' pos = 302253 snvend = 302265 end = get_end(pos, alt, category, snvend, svend=None, svlen=None) assert end == snvend
def test_get_end_tiddit_translocation(): ## GIVEN a translocation alt = "N[hs37d5:12060532[" category = "sv" pos = 724779 ## WHEN parsing the end coordinate end = get_end(pos, alt, category, snvend=None, svend=None, svlen=None) ## THEN assert that the end is the same as en coordinate described in alt field assert end == 12060532
def test_get_end_tiddit_translocation(): ## GIVEN a translocation alt = 'N[hs37d5:12060532[' category = 'sv' pos = 724779 ## WHEN parsing the end coordinate end = get_end(pos, alt, category, snvend=None, svend=None, svlen=None) ## THEN assert that the end is the same as en coordinate described in alt field assert end == 12060532
def test_get_end_deletion(): ## GIVEN a translocation alt = "<DEL>" category = "sv" pos = 869314 svend = 870246 svlen = None ## WHEN parsing the end coordinate end = get_end(pos, alt, category, snvend=None, svend=svend, svlen=svlen) ## THEN assert that the end is the same as en coordinate described in alt field assert end == svend
def test_get_end_deletion(): ## GIVEN a translocation alt = '<DEL>' category = 'sv' pos = 869314 svend = 870246 svlen = None ## WHEN parsing the end coordinate end = get_end(pos, alt, category, snvend=None, svend=svend, svlen=svlen) ## THEN assert that the end is the same as en coordinate described in alt field assert end == svend