from setup_helper import SetupHelper
from Cython.Distutils import build_ext
name = "jcvi"
classifiers = [
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Programming Language :: Python',
'Programming Language :: Python :: 2',
'Topic :: Scientific/Engineering :: Bio-Informatics',
]
# Use the helper
h = SetupHelper(initfile="jcvi/__init__.py", readmefile="README.md")
h.check_version(name, majorv=2, minorv=7)
setup_dir = op.abspath(op.dirname(__file__))
requirements = [
x.strip() for x in open(op.join(setup_dir, 'requirements.txt'))
]
h.install_requirements(requires=["cython", "numpy"])
# Now these are available
# Start the show
ext_modules = [
Extension("jcvi.assembly.chic", ["jcvi/assembly/chic.pyx"],
include_dirs=[np.get_include()],
extra_compile_args=["-O3"]),
Extension("jcvi.formats.cblast", ["jcvi/formats/cblast.pyx"],
extra_compile_args=["-O3"])
NAME = "jcvi"
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
# Use the helper
h = SetupHelper(initfile="jcvi/__init__.py", readmefile="README.md")
h.check_version(NAME, majorv=2, minorv=7)
cmdclass = versioneer.get_cmdclass()
include_dirs = []
setup_dir = op.abspath(op.dirname(__file__))
requirements = [
x.strip() for x in open(op.join(setup_dir, "requirements.txt"))
]
h.install_requirements(requires=["cython", "numpy"])
# Build the ext
try:
import numpy as np
from Cython.Distutils import build_ext
cmdclass.update({"build_ext": build_ext})
include_dirs.append(np.get_include())
name = 'treecut'
classifiers = [
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Programming Language :: Python',
'Programming Language :: Python :: 2',
'Topic :: Scientific/Engineering :: Bio-Informatics',
]
with open('requirements.txt') as f:
required = f.read().splitlines()
# Use the helper
h = SetupHelper(initfile="treecut/__init__.py", readmefile="README.md")
h.check_version(name, majorv=2, minorv=7)
setup(
name=name,
version=h.version,
author=h.author,
author_email=h.email,
license=h.license,
long_description=h.long_description,
packages=[name],
scripts=glob('scripts/*.py') + ["treecut.py"],
classifiers=classifiers,
url='http://github.com/tanghaibao/treecut',
description="Find nodes in hierarchical clustering that are statistically significant",
install_requires=required + ["ete2"],
)
sys.exit(errno)
NAME = "jcvi"
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
# Use the helper
h = SetupHelper(initfile="jcvi/__init__.py", readmefile="README.md")
h.check_version(NAME, majorv=3, minorv=6)
cmdclass = versioneer.get_cmdclass()
include_dirs = []
setup_dir = op.abspath(op.dirname(__file__))
requirements = [
x.strip() for x in open(op.join(setup_dir, "requirements.txt"))
]
h.install_requirements(requires=["cython", "numpy"])
# Build the ext
try:
import numpy as np
from Cython.Distutils import build_ext
cmdclass.update({"build_ext": build_ext})
include_dirs.append(np.get_include())
