def create_descriptor(args):
# pylint: disable=unsubscriptable-object
app = SnakeBidsApp(args.app_dir.resolve())
add_dynamic_args(app.parser, app.config["parse_args"],
app.config["pybids_inputs"])
app.create_descriptor(args.out_path)
print(f"Boutiques descriptor created at {args.out_path}")
def get_parser():
"""Exposes parser for sphinx doc generation, cwd is the docs dir"""
app = SnakeBidsApp('../{{cookiecutter.project_slug}}',
skip_parse_args=True)
return app.parser
def main():
"""Console script for {{cookiecutter.project_slug}}."""
app = SnakeBidsApp(os.path.abspath(os.path.dirname(__file__)))
app.run_snakemake()
return 0
def get_parser():
"""Exposes parser for sphinx doc generation, cwd is the docs dir"""
app = SnakeBidsApp('../snakebids2dicom', skip_parse_args=True)
return app.parser
def main():
"""Console script for snakebids2dicom."""
app = SnakeBidsApp(os.path.abspath(os.path.dirname(__file__)))
app.run_snakemake()
return 0
def main():
app = SnakeBidsApp(
os.path.abspath(os.path.dirname(__file__)),
configfile_path="config/snakebids.yml",
)
app.run_snakemake()
def main():
app = SnakeBidsApp(os.path.abspath(os.path.dirname(__file__)))
app.run_snakemake()
def main():
app = SnakeBidsApp(
Path(__file__).resolve().parents[1]) # to get repository root
app.run_snakemake()