def togff(self, gff={}):
"""
Overrides SpliceSiteBase.togff()
Takes care for proper fstart and fstop setting
"""
self._gff['fstart'] = self.pos - 1
self._gff['fstop'] = self.pos
return SpliceSiteBase.togff(self, gff=gff)
def togff(self,gff={}):
"""
Overrides SpliceSiteBase.togff()
Takes care for proper fstart and fstop setting
"""
self._gff['fstart'] = self.pos-1
self._gff['fstop'] = self.pos
return SpliceSiteBase.togff(self,gff=gff)
def togff(self, gff={}):
"""
Overrides SpliceSiteBase.togff()
Takes care for proper fstart and fstop setting
"""
self._gff['fstart'] = self.pos + 1
self._gff['fstop'] = self.pos + 2
if not self.is_canonical():
if not self._gff.has_key('column9data'):
self._gff['column9data'] = {}
self._gff['column9data']['Non-canonical'] = self.donor
# return basal pliceSiteBase.togff() function
return SpliceSiteBase.togff(self, gff=gff)
def togff(self,gff={}):
"""
Overrides SpliceSiteBase.togff()
Takes care for proper fstart and fstop setting
"""
self._gff['fstart'] = self.pos+1
self._gff['fstop'] = self.pos+2
if not self.is_canonical():
if not self._gff.has_key('column9data'):
self._gff['column9data'] = {}
self._gff['column9data']['Non-canonical'] = self.donor
# return basal pliceSiteBase.togff() function
return SpliceSiteBase.togff(self,gff=gff)