Ejemplos de apply_affines_carefully en Python

Ejemplo n.º 1

Archivo: dataview.py Proyecto: aestrivex/cvu

    def tracks_gen(self,params):
        import tractography

        self.tracks = tractography.plot_fancily(params.track_file,
            figure=self.scene.mayavi_scene)
        tractography.apply_affines_carefully(self.tracks, params.b0_volume,
            params.track_file, params.subject, params.subjects_dir, 
            fsenvsrc=params.fs_setup)
        tractography.fix_skewing(self.tracks, use_fsavg5=False,
            lhsurf=self.syrf_lh, rhsurf=self.syrf_rh)

Ejemplo n.º 2

    def tracks_gen(self, params):
        import tractography

        self.tracks = tractography.plot_fancily(params.track_file,
                                                figure=self.scene.mayavi_scene)
        tractography.apply_affines_carefully(self.tracks,
                                             params.b0_volume,
                                             params.track_file,
                                             params.subject,
                                             params.subjects_dir,
                                             fsenvsrc=params.fs_setup)
        tractography.fix_skewing(self.tracks,
                                 use_fsavg5=False,
                                 lhsurf=self.syrf_lh,
                                 rhsurf=self.syrf_rh)

Ejemplo n.º 3

Archivo: tractography_debug.py Proyecto: aestrivex/cvu

import tractography
import os

truff='/local_mount/space/truffles/1/users/rlaplant/'

trk=os.path.join(truff,'data/qbi/hcps030/tracts20k.trk')
b0=os.path.join(truff,'data/qbi/hcps030/dset/b0.nii.gz')
subj='hcps030_FS'
subjects_dir=os.path.join(truff,'data/hcpnmr/')
fs_script='/usr/local/freesurfer/nmr-stable53-env'

self.tark = tark = tractography.plot_fancily(trk)

tractography.apply_affines_carefully(tark, b0, trk, subj, subjects_dir, 
	fsenvsrc=fs_script)

tractography.fix_skewing(tark)

Ejemplo n.º 4

import tractography
import os

truff = '/local_mount/space/truffles/1/users/rlaplant/'

trk = os.path.join(truff, 'data/qbi/hcps030/tracts20k.trk')
b0 = os.path.join(truff, 'data/qbi/hcps030/dset/b0.nii.gz')
subj = 'hcps030_FS'
subjects_dir = os.path.join(truff, 'data/hcpnmr/')
fs_script = '/usr/local/freesurfer/nmr-stable53-env'

self.tark = tark = tractography.plot_fancily(trk)

tractography.apply_affines_carefully(tark,
                                     b0,
                                     trk,
                                     subj,
                                     subjects_dir,
                                     fsenvsrc=fs_script)

tractography.fix_skewing(tark)