def finalise(self, cfg):
log.debug("Finalising subset %s", self.subset_id)
log.debug("models not done: %s", self.models_not_done)
if self.models_not_done:
return False
# We might already have done everything
if self.status == DONE:
return True
self.model_selection(cfg)
# Do all the final cleanup
if cfg.save_phylofiles:
# Write out a summary of the subsets
cfg.reporter.write_subset_summary(self)
else:
# Otherwise, clean up files generated by the programs as well
if self.alignment_path:
remove_runID_files(self.alignment_path)
self.models_to_process = []
self.status = DONE
cfg.progress.subset_done(self)
return True
def finalise(self, cfg):
log.debug("Finalising subset %s", self.subset_id)
log.debug("models not done: %s", self.models_not_done)
if self.models_not_done:
return False
# We might already have done everything
if self.status == DONE:
return True
self.model_selection(cfg)
# Do all the final cleanup
if cfg.save_phylofiles:
# Write out a summary of the subsets
cfg.reporter.write_subset_summary(self)
else:
# Otherwise, clean up files generated by the programs as well
if self.alignment_path:
remove_runID_files(self.alignment_path)
self.models_to_process = []
self.status = DONE
cfg.progress.subset_done(self)
return True
def finalise(self, cfg):
if self.models_not_done:
return False
# We might already have done everything
if self.status == DONE:
return True
# Do all the final cleanup
cfg.reporter.write_subset_summary(self)
self.save_results(cfg)
self.model_selection(cfg)
if not cfg.save_phylofiles:
remove_runID_files(self.alignment_path)
self.models_to_process = []
self.status = DONE
cfg.progress.subset_done(self)
return True
def finalise(self, cfg):
if self.models_not_done:
return False
# We might already have done everything
if self.status == DONE:
return True
# Do all the final cleanup
cfg.reporter.write_subset_summary(self)
self.save_results(cfg)
self.model_selection(cfg)
if not cfg.save_phylofiles:
remove_runID_files(self.alignment_path)
self.models_to_process = []
self.status = DONE
cfg.progress.subset_done(self)
return True