def resnet(x, is_train):
W1 = utils.weight_variable([1, 1, x.get_shape()[3].value, 64], name='W1')
b1 = utils.bias_variable([64], 'bias1')
conv1 = utils.conv2d(x, W1, b1)
# conv1 =tf.layers.batch_normalization(conv1,training=is_train)
conv1 = tf.nn.relu(conv1)
bn1 = bottleneck(conv1, 1, is_train)
cc1 = tf.concat([bn1, conv1], axis=3, name='C1')
cc1 = tf.nn.relu(cc1)
bn2 = bottleneck(cc1, 2, is_train)
cc2 = tf.concat([bn2, cc1], axis=3, name='C2')
cc2 = tf.nn.relu(cc2)
bn3 = bottleneck(cc2, 3, is_train)
cc3 = tf.concat([bn3, cc2], axis=3, name='C2')
cc3 = tf.nn.relu(cc3)
W2 = utils.weight_variable([1, 1, cc3.get_shape()[3].value, 64], name='W2')
b2 = utils.bias_variable([64], 'bias2')
conv2 = utils.conv2d(cc3, W2, b2)
# conv2 = tf.layers.batch_normalization(conv2, training=is_train)
conv2 = tf.nn.relu(conv2)
W3 = utils.weight_variable([1, 1, conv2.get_shape()[3].value, 1],
name='W3')
b3 = utils.bias_variable([1], 'bias3')
conv3 = utils.conv2d(conv2, W3, b3)
return conv3
def _discriminator(self,
input_images,
dims,
train_phase,
activation=tf.nn.relu,
scope_name="discriminator",
scope_reuse=False):
N = len(dims)
with tf.variable_scope(scope_name) as scope:
if scope_reuse:
scope.reuse_variables()
h = input_images
skip_bn = True # First layer of discriminator skips batch norm
for index in range(N - 2):
W = utils.weight_variable([4, 4, dims[index], dims[index + 1]],
name="W_%d" % index)
b = tf.zeros([dims[index + 1]])
h_conv = utils.conv2d_strided(h, W, b)
if skip_bn:
h_bn = h_conv
skip_bn = False
else:
#d_bn = ops.batch_norm(name='d_bn{0}'.format(index))
h_bn = d_bn(h_conv, train=train_phase)
h = activation(h_bn, name="h_%d" % index)
utils.add_activation_summary(h)
W_pred = utils.weight_variable([4, 4, dims[-2], dims[-1]],
name="W_pred")
b = tf.zeros([dims[-1]])
h_pred = utils.conv2d_strided(h, W_pred, b)
return None, h_pred, None # Return the last convolution output. None values are returned to maintatin disc from other GAN
def build_graph():
x_origin = tf.reshape(x, [-1, 3, 11, 1])
x_origin_noise = tf.reshape(x_noise, [-1, 3, 11, 1])
W_e_conv1 = weight_variable([5, 5, 1, 16], "w_e_conv1")
b_e_conv1 = bias_variable([16], "b_e_conv1")
print(conv2d(x_origin_noise, W_e_conv1).get_shape())
h_e_conv1 = tf.nn.relu(tf.add(conv2d(x_origin_noise, W_e_conv1),
b_e_conv1))
W_e_conv2 = weight_variable([5, 5, 16, 32], "w_e_conv2")
b_e_conv2 = bias_variable([32], "b_e_conv2")
h_e_conv2 = tf.nn.relu(tf.add(conv2d(h_e_conv1, W_e_conv2), b_e_conv2))
code_layer = h_e_conv2
print("code layer shape : %s" % h_e_conv2.get_shape())
W_d_conv1 = weight_variable([5, 5, 16, 32], "w_d_conv1")
# output_shape_d_conv1 = tf.pack([tf.shape(x)[0], 14, 14, 16])
output_shape_d_conv1 = tf.pack([tf.shape(x)[0], 1, 3, 32])
h_d_conv1 = tf.nn.relu(deconv2d(h_e_conv2, W_d_conv1,
output_shape_d_conv1))
W_d_conv2 = weight_variable([5, 5, 1, 16], "w_d_conv2")
b_d_conv2 = bias_variable([16], "b_d_conv2")
# output_shape_d_conv2 = tf.pack([tf.shape(x)[0], 3, 11, 1])
output_shape_d_conv2 = tf.pack([tf.shape(x)[0], 2, 6, 16])
h_d_conv2 = tf.nn.relu(deconv2d(h_d_conv1, W_d_conv2,
output_shape_d_conv2))
x_reconstruct = h_d_conv2
print("reconstruct layer shape : %s" % x_reconstruct.get_shape())
return x_origin, code_layer, x_reconstruct
def add_prediction_op(self):
fs = [5, 5] # filter sizes
cs = [
4, 40, 80
] # cs[i] is output number of channels from layer i [where layer 0 is input layer]
# First conv layer
W_conv1 = utils.weight_variable([fs[0], cs[0], cs[1]])
b_conv1 = utils.bias_variable([cs[1]])
h_conv1 = utils.lrelu(utils.conv1d(self.x, W_conv1) + b_conv1)
# Second conv layer
W_conv2 = utils.weight_variable([fs[1], cs[1], cs[2]])
b_conv2 = utils.bias_variable([cs[2]])
h_conv2 = utils.lrelu(utils.conv1d(h_conv1, W_conv2) + b_conv2)
# First fully connected layer. Reshape the convolution output to 1D vector
W_fc1 = utils.weight_variable([self.config.strlen * cs[2], 1024])
b_fc1 = utils.bias_variable([1024])
h_conv2_flat = tf.reshape(h_conv2, [-1, self.config.strlen * cs[2]])
h_fc1 = utils.lrelu(tf.matmul(h_conv2_flat, W_fc1) + b_fc1)
# Dropout (should be added to earlier layers too...)
h_fc1_drop = tf.nn.dropout(h_fc1, self.keep_prob)
# Final fully-connected layer
W_fc2 = utils.weight_variable([1024, 3])
b_fc2 = utils.bias_variable([1])
y_conv = tf.matmul(h_fc1_drop, W_fc2) + b_fc2
return y_conv
def add_prediction_op(self):
fs = [5, 5] # filter sizes
cs = [4, 40, 80] # cs[i] is output number of channels from layer i [where layer 0 is input layer]
# First conv layer
W_conv1 = utils.weight_variable([fs[0], cs[0], cs[1]])
b_conv1 = utils.bias_variable([cs[1]])
h_conv1 = utils.lrelu(utils.conv1d(self.x, W_conv1) + b_conv1)
# Second conv layer
W_conv2 = utils.weight_variable([fs[1], cs[1], cs[2]])
b_conv2 = utils.bias_variable([cs[2]])
h_conv2 = utils.lrelu(utils.conv1d(h_conv1, W_conv2) + b_conv2)
# First fully connected layer. Reshape the convolution output to 1D vector
W_fc1 = utils.weight_variable([self.config.strlen * cs[2], 1024])
b_fc1 = utils.bias_variable([1024])
h_conv2_flat = tf.reshape(h_conv2, [-1, self.config.strlen * cs[2]])
h_fc1 = utils.lrelu(tf.matmul(h_conv2_flat, W_fc1) + b_fc1)
# Dropout (should be added to earlier layers too...)
h_fc1_drop = tf.nn.dropout(h_fc1, self.keep_prob)
# Final fully-connected layer
W_fc2 = utils.weight_variable([1024, 1])
b_fc2 = utils.bias_variable([1])
y_conv = tf.matmul(h_fc1_drop, W_fc2) + b_fc2
y_out = tf.sigmoid(y_conv)
is_zero = tf.clip_by_value(tf.reduce_sum(self.x), 0, 1) # basically will be 1 iff at least one entry of x is nonzero
y_out = tf.multiply(y_out, is_zero)
return y_out
def _generator(self, z, dims, train_phase, activation=tf.nn.relu, scope_name="generator"):
N = len(dims)
image_size = self.resized_image_size // (2 ** (N - 1))
with tf.variable_scope(scope_name) as scope:
W_z = utils.weight_variable([self.z_dim, dims[0] * image_size * image_size], name="W_z")
b_z = utils.bias_variable([dims[0] * image_size * image_size], name="b_z")
h_z = tf.matmul(z, W_z) + b_z
h_z = tf.reshape(h_z, [-1, image_size, image_size, dims[0]])
h_bnz = utils.batch_norm(h_z, dims[0], train_phase, scope="gen_bnz")
h = activation(h_bnz, name='h_z')
utils.add_activation_summary(h)
for index in range(N - 2):
image_size *= 2
W = utils.weight_variable([5, 5, dims[index + 1], dims[index]], name="W_%d" % index)
b = utils.bias_variable([dims[index + 1]], name="b_%d" % index)
deconv_shape = tf.stack([tf.shape(h)[0], image_size, image_size, dims[index + 1]])
h_conv_t = utils.conv2d_transpose_strided(h, W, b, output_shape=deconv_shape)
h_bn = utils.batch_norm(h_conv_t, dims[index + 1], train_phase, scope="gen_bn%d" % index)
h = activation(h_bn, name='h_%d' % index)
utils.add_activation_summary(h)
image_size *= 2
W_pred = utils.weight_variable([5, 5, dims[-1], dims[-2]], name="W_pred")
b_pred = utils.bias_variable([dims[-1]], name="b_pred")
deconv_shape = tf.stack([tf.shape(h)[0], image_size, image_size, dims[-1]])
h_conv_t = utils.conv2d_transpose_strided(h, W_pred, b_pred, output_shape=deconv_shape)
pred_image = tf.nn.tanh(h_conv_t, name='pred_image')
utils.add_activation_summary(pred_image)
return pred_image
def _discriminator(self, input_images, dims, train_phase, activation=tf.nn.relu, scope_name="discriminator",
scope_reuse=False):
N = len(dims)
with tf.variable_scope(scope_name) as scope:
if scope_reuse:
scope.reuse_variables()
h = input_images
skip_bn = True # First layer of discriminator skips batch norm
for index in range(N - 2):
W = utils.weight_variable([5, 5, dims[index], dims[index + 1]], name="W_%d" % index)
b = utils.bias_variable([dims[index + 1]], name="b_%d" % index)
h_conv = utils.conv2d_strided(h, W, b)
if skip_bn:
h_bn = h_conv
skip_bn = False
else:
h_bn = utils.batch_norm(h_conv, dims[index + 1], train_phase, scope="disc_bn%d" % index)
h = activation(h_bn, name="h_%d" % index)
utils.add_activation_summary(h)
shape = h.get_shape().as_list()
image_size = self.resized_image_size // (2 ** (N - 2)) # dims has input dim and output dim
h_reshaped = tf.reshape(h, [self.batch_size, image_size * image_size * shape[3]])
W_pred = utils.weight_variable([image_size * image_size * shape[3], dims[-1]], name="W_pred")
b_pred = utils.bias_variable([dims[-1]], name="b_pred")
h_pred = tf.matmul(h_reshaped, W_pred) + b_pred
return tf.nn.sigmoid(h_pred), h_pred, h
def build(self, input, is_dropout=False): #is_dropout 是否dropout
# 卷积层1 cov 5*5 6
W_conv1 = weight_variable([5, 5, tf.shape(input)[-1], 6]) #cov 5*5 6
b_conv1 = bias_variable([6])
h_conv1 = tf.nn.relu(conv2d(input, W_conv1) + b_conv1)
h_pool1 = avg_pooling(h_conv1)
# 卷积层2 cov 5*5 6
W_conv2 = weight_variable([5, 5, 6, 6])
b_conv2 = bias_variable([6])
h_conv2 = tf.nn.relu(conv2d(h_pool1, W_conv2) + b_conv2)
h_pool2 = avg_pooling(h_conv2)
#全连接1 120
W_fc1 = weight_variable([7 * 7 * 6, 120]) #卷积后图像大小
b_fc1 = bias_variable([120])
h_pool2_flat = tf.reshape(h_pool2, [-1, 7 * 7 * 6]) #需要将卷积后的拉伸为一列
h_fc1 = tf.nn.relu(tf.matmul(h_pool2_flat, W_fc1) + b_fc1)
if is_dropout: h_fc1 = tf.nn.dropout(h_fc1, 0.5)
# 全连接2 84
W_fc2 = weight_variable([120, 84]) # 卷积后图像大小
b_fc2 = bias_variable([84])
h_fc2 = tf.nn.relu(tf.matmul(h_fc1, W_fc2) + b_fc2)
if is_dropout: h_fc2 = tf.nn.dropout(h_fc2, 0.5)
# output 10
W_fc3 = weight_variable([84, 10]) # 卷积后图像大小
b_fc3 = bias_variable([10])
h_fc3 = tf.nn.relu(tf.matmul(h_fc2, W_fc3) + b_fc3)
return h_fc3
def create_network(self):
with tf.name_scope('Input'):
self._x = tf.placeholder(tf.float32, shape=[None, 1024], name='X')
self._y = tf.placeholder(tf.float32, shape=[None, 46], name='Y')
self._keep_prob = tf.placeholder(tf.float32)
channels1 = 16
channels2 = 32
channels3 = 64
with tf.name_scope('LeNetConvPool_1'):
input_image = tf.reshape(self._x, [-1, 32, 32, 1])
out_image_layer1 = utils.le_net_conv_pool(
input_image,
input_channels=1,
output_channels=channels1,
conv_count=1)
out_image_layer1_d = tf.nn.dropout(out_image_layer1,
self._keep_prob)
with tf.name_scope('LeNetConvPool_2'):
out_image_layer2 = utils.le_net_conv_pool(
out_image_layer1_d,
input_channels=channels1,
output_channels=channels2,
conv_count=2)
out_image_layer2_d = tf.nn.dropout(out_image_layer2,
self._keep_prob)
with tf.name_scope('LeNetConvPool_3'):
out_image_layer3 = utils.le_net_conv_pool(
out_image_layer2_d,
input_channels=channels2,
output_channels=channels3,
conv_count=3)
out_image_layer3_d = tf.nn.dropout(out_image_layer3,
self._keep_prob)
with tf.name_scope('FullConnect'):
W_fc1 = utils.weight_variable([4 * 4 * channels3, 256], 'W_fc1')
b_fc1 = utils.bias_variable([256], 'b_fc1')
h_pool2_flat = tf.reshape(out_image_layer3_d,
[-1, 4 * 4 * channels3])
h_fc1 = tf.nn.relu(tf.matmul(h_pool2_flat, W_fc1) + b_fc1)
h_fc1_drop = tf.nn.dropout(h_fc1, self._keep_prob)
with tf.name_scope('ReadoutLayer'):
W_fc2 = utils.weight_variable([256, 46], 'W_fc2')
b_fc2 = utils.bias_variable([46], 'b_fc2')
self._y_conv = tf.nn.softmax(tf.matmul(h_fc1_drop, W_fc2) + b_fc2)
with tf.name_scope('Train'):
cross_entropy = tf.reduce_mean(-tf.reduce_sum(
self._y * tf.log(tf.clip_by_value(self._y_conv, 1e-10, 1.0)),
reduction_indices=[1]))
self._train_step = tf.train.AdamOptimizer(
FLAGS.learning_rate).minimize(cross_entropy)
tf.scalar_summary('Cross Entropy', cross_entropy)
with tf.name_scope('Accuracy'):
correct_prediction = tf.equal(tf.argmax(self._y_conv, 1),
tf.argmax(self._y, 1))
self._accuracy = tf.reduce_mean(
tf.cast(correct_prediction, tf.float32))
tf.scalar_summary('Accuracy', self._accuracy)
self.sess.run(tf.initialize_all_variables())
def __init__(self, input_dim, hidden_dim, n_layers=1,
stddev=1., bias_value=0.0):
# bias value will only be applied to the hidden layers
self.input_dim = input_dim
self.hidden_dim = hidden_dim
self.hidden_layers = []
num_pairs = int((input_dim * (input_dim - 1)) / 2)
pairs = [None] * num_pairs
ctr = 0
for u in range(input_dim):
for v in range(u+1, input_dim):
pairs[ctr] = np.array((u, v))
ctr +=1
with tf.variable_scope('pairs_mlp'):
self.w_in_var = weight_variable((input_dim, num_pairs * hidden_dim),
stddev / np.sqrt(hidden_dim),
name='w_in')
self.w_out_var = weight_variable((num_pairs * hidden_dim, input_dim),
stddev / np.sqrt(hidden_dim),
name='w_out')
mask = np.zeros((input_dim, num_pairs * hidden_dim), dtype='float32')
hid_to_hid_mask = np.zeros((num_pairs * hidden_dim, num_pairs * hidden_dim), dtype='float32')
self.bias_hid = bias_variable((hidden_dim * num_pairs,), value=bias_value, name='bias_first_hid')
self.bias_out = bias_variable((input_dim,), name='bias_out')
for i in range(0, num_pairs * hidden_dim, hidden_dim):
hid_to_hid_mask[i:i + hidden_dim, i:i + hidden_dim] = 1.0
for j in range(num_pairs):
u = pairs[j][0]
v = pairs[j][1]
mask[u, (j*hidden_dim):((j+1)*hidden_dim)] = 1.0
mask[v, (j*hidden_dim):((j+1)*hidden_dim)] = 1.0
self.hid_to_hid_mask = tf.convert_to_tensor(hid_to_hid_mask)
self.in_out_mask = tf.convert_to_tensor(mask)
self.w_in = self.w_in_var * self.in_out_mask # element by element
self.w_out = self.w_out_var * tf.transpose(self.in_out_mask) # element by element
for i in range(n_layers - 1):
with tf.variable_scope('layer_' + str(i)):
w_hid = weight_variable((num_pairs * hidden_dim,
num_pairs * hidden_dim),
stddev / np.sqrt(hidden_dim))
b_hid = bias_variable((hidden_dim * num_pairs,),
value=bias_value)
self.hidden_layers.append((w_hid * self.hid_to_hid_mask,
b_hid))
def add_prediction_op(self):
fs = [5, 5] # filter sizes
cs = [4, 40, 80] # cs[i] is output number of channels from layer i [where layer 0 is input layer]
# First conv layer
W_conv1 = utils.weight_variable([fs[0], cs[0], cs[1]])
b_conv1 = utils.bias_variable([cs[1]])
h_conv1 = utils.lrelu(utils.conv1d(self.x, W_conv1) + b_conv1)
# Second conv layer
W_conv2 = utils.weight_variable([fs[1], cs[1], cs[2]])
b_conv2 = utils.bias_variable([cs[2]])
h_conv2 = utils.lrelu(utils.conv1d(h_conv1, W_conv2) + b_conv2)
# Conv layer on top of the coverage
W_conv_coverage = utils.weight_variable([fs[0], 1, cs[2]])
b_conv_coverage = utils.bias_variable([cs[2]])
conv_c = tf.expand_dims(self.e, -1)
#print(conv_c.shape, W_conv_coverage.shape, b_conv_coverage.shape)
h_conv_coverage = utils.lrelu(utils.conv1d(conv_c, W_conv_coverage) + b_conv_coverage)
h_concatenated = tf.concat([h_conv2, h_conv_coverage], axis = -1)
# First fully connected layer. Reshape the convolution output to 1D vector
orig_shape = h_concatenated.get_shape().as_list()
flat_shape = np.prod(orig_shape[1:])
new_shape = [-1,] + [flat_shape]
h_concatenated_flat = tf.reshape(h_concatenated, new_shape)
h_concat_drop = tf.nn.dropout(h_concatenated_flat, self.keep_prob)
fc1_in = h_concatenated_flat.get_shape().as_list()[-1]
W_fc1 = utils.weight_variable([fc1_in, 1024])
b_fc1 = utils.bias_variable([1024])
h_fc1 = utils.lrelu(tf.matmul(h_concat_drop, W_fc1) + b_fc1)
# Fully-connected layer on top of the coverage
#W_fc_coverage = utils.weight_variable([self.config.strlen, cs[2]])
#b_fc_coverage = utils.bias_variable([cs[2]])
#h_fc_coverage = tf.nn.relu(tf.matmul(self.e, W_fc_coverage) + b_fc_coverage)
#h_concatenated = tf.concat([h_fc1, h_fc_coverage], axis = -1)
# Dropout (should be added to earlier layers too...)
#h_concatenated_drop = tf.nn.dropout(h_concatenated, self.keep_prob)
h_fc1_drop = tf.nn.dropout(h_fc1, self.keep_prob)
# Final fully-connected layer
W_fc2 = utils.weight_variable([1024, 1])
b_fc2 = utils.bias_variable([1])
y_conv = tf.matmul(h_fc1_drop, W_fc2) + b_fc2
y_out = tf.sigmoid(y_conv)
return y_out
def init_weights(self):
""" Initialize all the trainable weights."""
self.w_g0 = weight_variable((self.sensor_size, self.hg_size))
self.b_g0 = bias_variable((self.hg_size, ))
self.w_l0 = weight_variable((self.loc_dim, self.hl_size))
self.b_l0 = bias_variable((self.hl_size, ))
self.w_g1 = weight_variable((self.hg_size, self.g_size))
self.b_g1 = bias_variable((self.g_size, ))
self.w_l1 = weight_variable((self.hl_size, self.g_size))
self.b_l1 = weight_variable((self.g_size, ))
def init_weights(self):
""" Initialize all the trainable weights."""
#G_image
conv_filt = (64, 64, 128)
self.w_c0 = weight_variable((5, 5, self.num_channels, conv_filt[0]))
self.b_c0 = bias_variable((conv_filt[0], ))
self.w_c1 = weight_variable((3, 3, conv_filt[0], conv_filt[1]))
self.b_c1 = bias_variable((conv_filt[1], ))
self.w_c2 = weight_variable((3, 3, conv_filt[1], conv_filt[2]))
self.b_c2 = bias_variable((conv_filt[2], ))
self.flat_dim = (self.coarse_size - 8)**2 * conv_filt[2]
self.w_x0 = weight_variable((self.flat_dim, self.output_dim))
self.b_x0 = bias_variable((self.output_dim, ))
def _generator(self,
z,
dims,
train_phase,
activation=tf.nn.relu,
scope_name="generator"):
N = len(dims)
image_size = self.resized_image_size // (2**(N - 1))
with tf.variable_scope(scope_name) as scope:
W_z = utils.weight_variable(
[self.z_dim, dims[0] * image_size * image_size], name="W_z")
h_z = tf.matmul(z, W_z)
h_z = tf.reshape(h_z, [-1, image_size, image_size, dims[0]])
# h_bnz = tf.contrib.layers.batch_norm(inputs=h_z, decay=0.9, epsilon=1e-5, is_training=train_phase,
# scope="gen_bnz")
# h_bnz = utils.batch_norm(h_z, dims[0], train_phase, scope="gen_bnz")
h_bnz = utils.batch_norm('gen_bnz', h_z, True, 'NHWC', train_phase)
h = activation(h_bnz, name='h_z')
utils.add_activation_summary(h)
for index in range(N - 2):
image_size *= 2
W = utils.weight_variable([4, 4, dims[index + 1], dims[index]],
name="W_%d" % index)
b = tf.zeros([dims[index + 1]])
deconv_shape = tf.stack(
[tf.shape(h)[0], image_size, image_size, dims[index + 1]])
h_conv_t = utils.conv2d_transpose_strided(
h, W, b, output_shape=deconv_shape)
# h_bn = tf.contrib.layers.batch_norm(inputs=h_conv_t, decay=0.9, epsilon=1e-5, is_training=train_phase,
# scope="gen_bn%d" % index)
# h_bn = utils.batch_norm(h_conv_t, dims[index + 1], train_phase, scope="gen_bn%d" % index)
h_bn = utils.batch_norm("gen_bn%d" % index, h_conv_t, True,
'NHWC', train_phase)
h = activation(h_bn, name='h_%d' % index)
utils.add_activation_summary(h)
image_size *= 2
W_pred = utils.weight_variable([4, 4, dims[-1], dims[-2]],
name="W_pred")
b = tf.zeros([dims[-1]])
deconv_shape = tf.stack(
[tf.shape(h)[0], image_size, image_size, dims[-1]])
h_conv_t = utils.conv2d_transpose_strided(
h, W_pred, b, output_shape=deconv_shape)
pred_image = tf.nn.tanh(h_conv_t, name='pred_image')
utils.add_activation_summary(pred_image)
return pred_image
def UNet(x, keep_probability):
layer1 = conv_block(x, 1)
pool1 = utils.max_pool(layer1, 2)
layer2 = conv_block(pool1, 2)
pool2 = utils.max_pool(layer2, 2)
layer3 = conv_block(pool2, 3)
pool3 = utils.max_pool(layer3, 2)
layer4 = conv_block(pool3, 4)
#upsampling
up5 = upsampling_bolck(layer3, layer4, 5)
layer5 = conv_block(up5, 5)
up6 = upsampling_bolck(layer2, layer5, 6)
layer6 = conv_block(up6, 6)
up7 = upsampling_bolck(layer1, layer6, 7)
layer7 = conv_block(up7, 7)
W6 = utils.weight_variable([1, 1, layer7.get_shape()[3].value, 1],
name='W6')
b6 = utils.bias_variable([1], 'bias6')
conv6_1 = utils.conv2d(layer7, W6, b6, 'conv_6')
return conv6_1
def LearningRegularizationOmitting(cv_left,
cv_right,
batch_size=1,
F=32,
D=192,
H=256,
W=512,
SHARE=None):
Y36relu_left = cv_left
Y36relu_right = cv_right
with tf.name_scope('Conv3d37'):
with tf.variable_scope('params', reuse=SHARE):
W37 = weight_variable((3, 3, 3, 1, 2 * F))
output37shape = [batch_size, D, H, W, 1]
Y37_left = conv3dt(Y36relu_left,
W37,
outputshape=output37shape,
stride=2)
Y37_right = conv3dt(Y36relu_right,
W37,
outputshape=output37shape,
stride=2)
return Y37_left, Y37_right
def conv_layer(input, r_field, input_c, out_c, nr):
W = utils.weight_variable([r_field, r_field, input_c, out_c],
name="W" + str(nr))
b = utils.bias_variable([out_c], name="b" + str(nr))
conv = utils.conv2d_basic(input, W, b, name="conv" + str(nr))
relu = tf.nn.relu(conv, name="relu" + str(nr))
return relu
def init_weights(self):
""" Initialize all the trainable weights."""
#G_image
conv_filt = (64, 64, 128)
self.w_c0 = weight_variable((5, 5, self.depth, conv_filt[0]))
self.b_c0 = bias_variable((conv_filt[0], ))
self.w_c1 = weight_variable((3, 3, conv_filt[0], conv_filt[1]))
self.b_c1 = bias_variable((conv_filt[1], ))
self.w_c2 = weight_variable((3, 3, conv_filt[1], conv_filt[2]))
self.b_c2 = bias_variable((conv_filt[2], ))
self.flat_dim = (self.win_size - 8)**2 * conv_filt[2]
self.w_x0 = weight_variable((self.flat_dim, self.hg_size))
self.b_x0 = bias_variable((self.hg_size, ))
#G_loc
self.w_l0 = weight_variable((self.loc_dim, self.hl_size))
self.b_l0 = bias_variable((self.hl_size, ))
def fcnLayer(x, keep_probability):
w_size = 3
h_size = 3
layer_size = [128, 128, 64, 64, 64, 64, 64, 64, 64]
# for i in range(len(layer_size)):
x1 = singleLayer(x, w_size, h_size, layer_size[0], 1, keep_probability)
x2 = singleLayer(x1, w_size, h_size, layer_size[1], 2, keep_probability)
x3 = singleLayer(x2, w_size, h_size, layer_size[2], 3, keep_probability)
x4 = singleLayer(x3, w_size, h_size, layer_size[3], 4, keep_probability)
x5 = singleLayer(x4, w_size, h_size, layer_size[4], 5, keep_probability)
# x6=singleLayer(x5,w_size,h_size,layer_size[5],6,keep_probability)
# x7=singleLayer(x6,w_size,h_size,layer_size[6],7,keep_probability)
# x8=singleLayer(x7,1,1,layer_size[7],8,keep_probability)
# x9=singleLayer(x8,1,1,layer_size[8],9,keep_probability)
# W_out = utils.weight_variable([1, 1, x6.get_shape()[3].value, 1], name='W_out')
# b_out = utils.bias_variable([1], 'bias_out')
# output = utils.conv2d(x6, W_out, b_out)
#
# W_out = utils.weight_variable([1, 1, x6.get_shape()[3].value, 1], name='W_out')
# b_out = utils.bias_variable([1], 'bias_out')
# output = utils.conv2d(x6, W_out, b_out)
#
W_out = utils.weight_variable([1, 1, x5.get_shape()[3].value, 1],
name='W_out')
b_out = utils.bias_variable([1], 'bias_out')
output = utils.conv2d(x5, W_out, b_out, name='conv_out')
# packet=[conv1,conv2,conv3,conv4,output]
return output
def inference(self, flag):
with tf.variable_scope('layers', reuse=flag) as layer_scope:
with tf.variable_scope('stage1') as scope:
kernel = utils.weight_variable([5, 5, 3, 32], name='weights')
biases = utils.bias_variable([32], name='biases')
conv1 = utils.conv2d(self.ph_image, kernel, biases)
pool1 = tf.nn.max_pool(conv1,
ksize=[1, 3, 3, 1],
strides=[1, 2, 2, 1],
padding='SAME',
name='pool1')
relu1 = tf.nn.relu(pool1, name=scope.name)
with tf.variable_scope('stage2') as scope:
kernel = utils.weight_variable([5, 5, 32, 32], name='weights')
biases = utils.bias_variable([32], name='biases')
conv2 = utils.conv2d(relu1, kernel, biases)
relu2 = tf.nn.relu(conv2, name='relu2')
pool2 = tf.nn.avg_pool(relu2,
ksize=[1, 3, 3, 1],
strides=[1, 2, 2, 1],
padding='SAME',
name=scope.name)
with tf.variable_scope('stage3') as scope:
kernel = utils.weight_variable([5, 5, 32, 64], name='weights')
biases = utils.bias_variable([64], name='biases')
conv3 = utils.conv2d(pool2, kernel, biases)
relu3 = tf.nn.relu(conv3, name='relu3')
pool3 = tf.nn.avg_pool(relu3,
ksize=[1, 3, 3, 1],
strides=[1, 2, 2, 1],
padding='SAME',
name=scope.name)
dim = 1
for d in pool3.get_shape()[1:].as_list():
dim *= d
reshape = tf.reshape(pool3, [-1, dim])
with tf.variable_scope('fc1') as scope:
weights = utils.weight_variable([dim, 64], name='weights')
biases = utils.bias_variable([64], name='biases')
fc1 = tf.matmul(reshape, weights) + biases
with tf.variable_scope('fc2') as scope:
weights = utils.weight_variable([64, 10], name='weights')
biases = utils.bias_variable([10], name='biases')
fc2 = tf.matmul(fc1, weights) + biases
return fc2
def __init__(self,
input_dim,
hidden_dim,
n_layers=1,
stddev=1.,
bias_value=0.0):
# bias value will only be applied to the hidden layers
self.input_dim = input_dim
self.hidden_dim = hidden_dim
self.hidden_layers = []
with tf.variable_scope('block_mlp'):
self.w_in_var = weight_variable(
(input_dim, input_dim * hidden_dim),
stddev / np.sqrt(hidden_dim),
name='w_in')
self.w_out_var = weight_variable(
(input_dim * hidden_dim, input_dim),
stddev / np.sqrt(hidden_dim),
name='w_out')
mask = np.zeros((input_dim, input_dim * hidden_dim),
dtype='float32')
hid_to_hid_mask = np.zeros(
(input_dim * hidden_dim, input_dim * hidden_dim),
dtype='float32')
self.bias_hid = bias_variable((hidden_dim * input_dim, ),
value=bias_value,
name='bias_first_hid')
self.bias_out = bias_variable((input_dim, ), name='bias_out')
for i, row in enumerate(mask):
row[i * hidden_dim:(i + 1) * hidden_dim] = 1.0
for i in range(0, input_dim * hidden_dim, hidden_dim):
hid_to_hid_mask[i:i + hidden_dim, i:i + hidden_dim] = 1.0
self.hid_to_hid_mask = tf.convert_to_tensor(hid_to_hid_mask)
self.in_out_mask = tf.convert_to_tensor(mask)
self.w_in = self.w_in_var * self.in_out_mask
self.w_out = self.w_out_var * tf.transpose(self.in_out_mask)
for i in range(n_layers - 1):
with tf.variable_scope('layer_' + str(i)):
w_hid = weight_variable(
(input_dim * hidden_dim, input_dim * hidden_dim),
stddev / np.sqrt(hidden_dim))
b_hid = bias_variable((hidden_dim * input_dim, ),
value=bias_value)
self.hidden_layers.append(
(w_hid * self.hid_to_hid_mask, b_hid))
def convLayer(x, layer):
W = utils.weight_variable([3, 3, x.get_shape()[3].value, 64],
name='W%s' % layer)
b = utils.bias_variable([64], 'bias%s' % layer)
conv = utils.conv2d(x, W, b)
conv = tf.nn.relu(conv)
return conv
def _init_discriminator_variables(self):
with tf.name_scope('discriminator'):
with tf.name_scope('weights'):
self._W_discr1 = weight_variable([5, 5, 3, 128])
self._W_discr2 = weight_variable([5, 5, 128, 256])
self._W_discr3 = weight_variable([5, 5, 256, 512])
if self.discr_whole_image:
self._W_discr4 = weight_variable([5, 5, 512, 512])
self._W_dfc = weight_variable([4 * 4 * 512, 1])
with tf.name_scope('biases'):
self._b_discr1 = bias_variable([128])
self._b_discr2 = bias_variable([256])
self._b_discr3 = bias_variable([512])
if self.discr_whole_image:
self._b_discr4 = bias_variable([512])
self._b_dfc = bias_variable([1])
def _fully_connected_layer(self):
"""
Fully connected layer with 1024 neurons to allow processing of entire image.
"""
W_fc1 = utils.weight_variable([7 * 7 * 64, 1024])
b_fc1 = utils.bias_variable([1024])
h_pool2_flat = tf.reshape(self._pool_layer_2, [-1, 7*7*64])
h_fc1 = tf.nn.relu(tf.matmul(h_pool2_flat, W_fc1) + b_fc1)
return h_fc1
def _pool_layer_2(self):
"""
Second pooling layer.
"""
W_conv2 = utils.weight_variable([5, 5, 32, 64])
b_conv2 = utils.bias_variable([64])
h_conv2 = tf.nn.relu(utils.conv2d(self._pool_layer_1, W_conv2) + b_conv2)
h_pool2 = utils.max_pool_2x2(h_conv2) # image size is 7 x 7
return h_pool2
def classifier(self, x, phase_train, is_training=True, reuse=False):
'''
The end part of the deep network which takes in the extracted
features and classifies them into digits
'''
with tf.variable_scope('classifier', reuse=reuse):
with tf.name_scope('fc4'):
W_fc2 = ut.weight_variable([256, 128], 'fc4_wt')
b_fc2 = ut.bias_variable([128], 'fc4_bias')
h_fc2 = tf.nn.relu(tf.matmul(x, W_fc2) + b_fc2)
with tf.name_scope('fc5'):
W_fc3 = ut.weight_variable([128, 4], 'fc5_wt')
b_fc3 = ut.bias_variable([4], 'fc5 _bias')
out = tf.matmul(h_fc2, W_fc3) + b_fc3
return out
def _value_network(self, state): """Builds the value network.""" w1 = weight_variable([3, 3, 1, self.NUM_CONV_1_FILTERS], name='w1') b1 = bias_variable([self.NUM_CONV_1_FILTERS]) conv1 = tf.nn.relu(conv2d(state, w1) + b1) w2 = weight_variable( [3, 3, self.NUM_CONV_1_FILTERS, self.NUM_CONV_2_FILTERS], name='w2') b2 = bias_variable([self.NUM_CONV_2_FILTERS]) conv2 = tf.nn.relu(conv2d(conv1, w2) + b2) value_flattened = layers.flatten(conv2) w3 = weight_variable([value_flattened.get_shape().as_list()[1], 1], name='w3') b3 = bias_variable([1]) value = tf.matmul(value_flattened, w3) + b3 return value
def __init__(self,
input_layer,
input_layer_size,
num_classes,
scope=None,
**kwargs):
if not hasattr(num_classes, "__len__"):
num_classes = (num_classes, )
# All splits are done via half-spaces, so there are always 2^k-1 output
# nodes. We handle non-power-of-two nodes by keeping track of the buffer
# sizes vs. the actual multinomial dimensions.
self._num_classes = num_classes
self._dim_sizes = [2**(int(np.ceil(np.log2(c)))) for c in num_classes]
self._num_nodes = np.prod(
self._dim_sizes) - 1 # flatten the density into a 1-d grid
self._split_labels, self._split_masks = self.multinomial_split_masks()
with tf.variable_scope(scope or type(self).__name__):
self._labels = tf.placeholder(
tf.float32, shape=[None, np.prod(self._num_classes)])
W = weight_variable([input_layer_size, self._num_nodes])
b = bias_variable([self._num_nodes])
split_indices = tf.to_int32(tf.argmax(self._labels, 1))
splits, z = tf.gather(self._split_labels,
split_indices), tf.gather(
self._split_masks, split_indices)
# q is the value of the tree nodes
# m is the value of the multinomial bins
self._q = tf.reciprocal(1 +
tf.exp(-(tf.matmul(input_layer, W) + b)))
r = splits * tf.log(tf.clip_by_value(self._q, 1e-10, 1.0))
s = (1 - splits) * tf.log(tf.clip_by_value(1 - self._q, 1e-10,
1.0))
self._loss_function = tf.reduce_mean(
-tf.reduce_sum(z * (r + s), axis=[1]))
# Convert from multiscale output to multinomial output
L, R = self.multiscale_splits_masks()
q_tiles = tf.constant([1, np.prod(self._num_classes)])
m = tf.map_fn(
lambda q_i: self.multiscale_to_multinomial(q_i, L, R, q_tiles),
self._q)
# Reshape to the original dimensions of the density
density_shape = tf.stack([tf.shape(self._q)[0]] +
list(self._num_classes))
self._density = tf.reshape(m, density_shape)
self._cross_entropy = tf.reduce_mean(-tf.reduce_sum(
self._labels * tf.log(tf.clip_by_value(m, 1e-10, 1.0)) +
(1 - self._labels) *
tf.log(tf.clip_by_value(1 - m, 1e-10, 1.0)),
axis=[1]))
def _pool_layer_1(self):
"""
First pooling layer.
"""
W_conv1 = utils.weight_variable([5, 5, 1, 32])
b_conv1 = utils.bias_variable([32])
x_image = tf.reshape(self.image, [-1, 28, 28, 1])
h_conv1 = tf.nn.relu(utils.conv2d(x_image, W_conv1) + b_conv1)
h_pool1 = utils.max_pool_2x2(h_conv1) # image size is 14 x 14 here
return h_pool1
def bottleneck(x, layer, is_train):
W1 = utils.weight_variable([1, 1, x.get_shape()[3].value, 64],
name='W%s_1' % layer)
conv1 = utils.resConv2d(x, W1)
# conv1 = tf.layers.batch_normalization(conv1, training=is_train)
conv1 = tf.nn.relu(conv1)
W2 = utils.weight_variable([3, 3, conv1.get_shape()[3].value, 64],
name='W%s_2' % layer)
conv2 = utils.resConv2d(conv1, W2)
# conv2 = tf.layers.batch_normalization(conv2, training=is_train)
conv2 = tf.nn.relu(conv2)
W3 = utils.weight_variable([1, 1, conv2.get_shape()[3].value, 64],
name='W%s_3' % layer)
conv3 = utils.resConv2d(conv2, W3)
# conv3 = tf.layers.batch_normalization(conv3, training=is_train)
return conv3
def VAE(input_shape=[None, 784],
n_components_encoder=200,
n_components_decoder=200,
n_hidden=20,
continuous=False,
denoising=False,
debug=False):
# %%
# Input placeholder
if debug:
input_shape = [50, 784]
x = tf.Variable(np.zeros((input_shape), dtype=np.float32))
else:
x = tf.placeholder(tf.float32, input_shape)
print('* Input')
print('X:', x.get_shape().as_list())
# %%
# Optionally apply noise
if denoising:
print('* Denoising')
x_noise = corrupt(x)
else:
x_noise = x
if continuous:
activation = lambda x: tf.log(1 + tf.exp(x))
else:
activation = lambda x: tf.tanh(x)
dims = x_noise.get_shape().as_list()
n_features = dims[1]
print('* Encoder')
W_enc = weight_variable([n_features, n_components_encoder])
b_enc = bias_variable([n_components_encoder])
h_enc = activation(tf.matmul(x_noise, W_enc) + b_enc)
print('in:', x_noise.get_shape().as_list(),
'W_enc:', W_enc.get_shape().as_list(),
'b_enc:', b_enc.get_shape().as_list(),
'h_enc:', h_enc.get_shape().as_list())
print('* Variational Autoencoder')
W_mu = weight_variable([n_components_encoder, n_hidden])
b_mu = bias_variable([n_hidden])
W_log_sigma = weight_variable([n_components_encoder, n_hidden])
b_log_sigma = bias_variable([n_hidden])
z_mu = tf.matmul(h_enc, W_mu) + b_mu
z_log_sigma = 0.5 * (tf.matmul(h_enc, W_log_sigma) + b_log_sigma)
print('in:', h_enc.get_shape().as_list(),
'W_mu:', W_mu.get_shape().as_list(),
'b_mu:', b_mu.get_shape().as_list(),
'z_mu:', z_mu.get_shape().as_list())
print('in:', h_enc.get_shape().as_list(),
'W_log_sigma:', W_log_sigma.get_shape().as_list(),
'b_log_sigma:', b_log_sigma.get_shape().as_list(),
'z_log_sigma:', z_log_sigma.get_shape().as_list())
# %%
# Sample from noise distribution p(eps) ~ N(0, 1)
if debug:
epsilon = tf.random_normal(
[dims[0], n_hidden])
else:
epsilon = tf.random_normal(
tf.pack([tf.shape(x)[0], n_hidden]))
print('epsilon:', epsilon.get_shape().as_list())
# Sample from posterior
z = z_mu + tf.exp(z_log_sigma) * epsilon
print('z:', z.get_shape().as_list())
print('* Decoder')
W_dec = weight_variable([n_hidden, n_components_decoder])
b_dec = bias_variable([n_components_decoder])
h_dec = activation(tf.matmul(z, W_dec) + b_dec)
print('in:', z.get_shape().as_list(),
'W_dec:', W_dec.get_shape().as_list(),
'b_dec:', b_dec.get_shape().as_list(),
'h_dec:', h_dec.get_shape().as_list())
W_mu_dec = weight_variable([n_components_decoder, n_features])
b_mu_dec = bias_variable([n_features])
y = tf.nn.sigmoid(tf.matmul(h_dec, W_mu_dec) + b_mu_dec)
print('in:', z.get_shape().as_list(),
'W_mu_dec:', W_mu_dec.get_shape().as_list(),
'b_mu_dec:', b_mu_dec.get_shape().as_list(),
'y:', y.get_shape().as_list())
W_log_sigma_dec = weight_variable([n_components_decoder, n_features])
b_log_sigma_dec = bias_variable([n_features])
y_log_sigma = 0.5 * (
tf.matmul(h_dec, W_log_sigma_dec) + b_log_sigma_dec)
print('in:', z.get_shape().as_list(),
'W_log_sigma_dec:', W_log_sigma_dec.get_shape().as_list(),
'b_log_sigma_dec:', b_log_sigma_dec.get_shape().as_list(),
'y_log_sigma:', y_log_sigma.get_shape().as_list())
# p(x|z)
if continuous:
log_px_given_z = tf.reduce_sum(
-(0.5 * tf.log(2.0 * np.pi) + y_log_sigma) -
0.5 * tf.square((x - y) / tf.exp(y_log_sigma)))
else:
log_px_given_z = tf.reduce_sum(
x * tf.log(y) +
(1 - x) * tf.log(1 - y))
# d_kl(q(z|x)||p(z))
# Appendix B: 0.5 * sum(1 + log(sigma^2) - mu^2 - sigma^2)
kl_div = 0.5 * tf.reduce_sum(
1.0 + 2.0 * z_log_sigma - tf.square(z_mu) - tf.exp(2.0 * z_log_sigma))
print('* Output')
print('Y:', y.get_shape().as_list())
loss = -(log_px_given_z + kl_div)
return {'cost': loss, 'x': x, 'z': z, 'y': y}
def VAE(input_shape=[None, 784],
n_filters=[],
filter_sizes=[],
n_hidden=512,
n_code=64,
activation=tf.nn.relu,
denoising=False,
convolutional=False,
debug=False):
# %%
# Input placeholder
if debug:
input_shape = [50, 784]
x = tf.Variable(np.zeros((input_shape), dtype=np.float32))
else:
x = tf.placeholder(tf.float32, input_shape)
# %%
# Optionally apply denoising autoencoder
if denoising:
x_noise = corrupt(x)
else:
x_noise = x
# %%
# ensure 2-d is converted to square tensor.
if convolutional:
if len(x.get_shape()) == 2:
x_dim = np.sqrt(x_noise.get_shape().as_list()[1])
if x_dim != int(x_dim):
raise ValueError('Unsupported input dimensions')
x_dim = int(x_dim)
x_tensor = tf.reshape(
x_noise, [-1, x_dim, x_dim, 1])
elif len(x_noise.get_shape()) == 4:
x_tensor = x_noise
else:
raise ValueError('Unsupported input dimensions')
else:
x_tensor = x
current_input = x_tensor
print('* Input')
print('X:', current_input.get_shape().as_list())
# %%
# Build the encoder
shapes = []
print('* Encoder')
for layer_i, n_input in enumerate(n_filters[:-1]):
n_output = n_filters[layer_i + 1]
shapes.append(current_input.get_shape().as_list())
if convolutional:
n_input = shapes[-1][3]
W = weight_variable([
filter_sizes[layer_i],
filter_sizes[layer_i],
n_input, n_output])
b = bias_variable([n_output])
output = activation(
tf.add(tf.nn.conv2d(
current_input, W,
strides=[1, 2, 2, 1], padding='SAME'), b))
else:
W = weight_variable([n_input, n_output])
b = bias_variable([n_output])
output = activation(tf.matmul(current_input, W) + b)
print('in:', current_input.get_shape().as_list(),
'W:', W.get_shape().as_list(),
'b:', b.get_shape().as_list(),
'out:', output.get_shape().as_list())
current_input = output
dims = current_input.get_shape().as_list()
if convolutional:
# %%
# Flatten and build latent layer as means and standard deviations
size = (dims[1] * dims[2] * dims[3])
if debug:
flattened = tf.reshape(current_input, [dims[0], size])
else:
flattened = tf.reshape(current_input,
tf.pack([tf.shape(x)[0], size]))
else:
size = dims[1]
flattened = current_input
print('* Reshape')
print(current_input.get_shape().as_list(),
'->', flattened.get_shape().as_list())
print('* FC Layer')
W_fc = weight_variable([size, n_hidden])
b_fc = bias_variable([n_hidden])
h = tf.nn.tanh(tf.matmul(flattened, W_fc) + b_fc)
print('in:', current_input.get_shape().as_list(),
'W_fc:', W_fc.get_shape().as_list(),
'b_fc:', b_fc.get_shape().as_list(),
'h:', h.get_shape().as_list())
print('* Variational Autoencoder')
W_mu = weight_variable([n_hidden, n_code])
b_mu = bias_variable([n_code])
W_sigma = weight_variable([n_hidden, n_code])
b_sigma = bias_variable([n_code])
mu = tf.matmul(h, W_mu) + b_mu
log_sigma = tf.mul(0.5, tf.matmul(h, W_sigma) + b_sigma)
print('in:', h.get_shape().as_list(),
'W_mu:', W_mu.get_shape().as_list(),
'b_mu:', b_mu.get_shape().as_list(),
'mu:', mu.get_shape().as_list())
print('in:', h.get_shape().as_list(),
'W_sigma:', W_sigma.get_shape().as_list(),
'b_sigma:', b_sigma.get_shape().as_list(),
'log_sigma:', log_sigma.get_shape().as_list())
# %%
# Sample from noise distribution p(eps) ~ N(0, 1)
if debug:
epsilon = tf.random_normal(
[dims[0], n_code])
else:
epsilon = tf.random_normal(
tf.pack([tf.shape(x)[0], n_code]))
print('epsilon:', epsilon.get_shape().as_list())
# Sample from posterior
z = mu + tf.mul(epsilon, tf.exp(log_sigma))
print('z:', z.get_shape().as_list())
print('* Decoder')
W_dec = weight_variable([n_code, n_hidden])
b_dec = bias_variable([n_hidden])
h_dec = tf.nn.relu(tf.matmul(z, W_dec) + b_dec)
print('in:', z.get_shape().as_list(),
'W_dec:', W_dec.get_shape().as_list(),
'b_dec:', b_dec.get_shape().as_list(),
'h_dec:', h_dec.get_shape().as_list())
W_fc_t = weight_variable([n_hidden, size])
b_fc_t = bias_variable([size])
h_fc_dec = tf.nn.relu(tf.matmul(h_dec, W_fc_t) + b_fc_t)
print('in:', h_dec.get_shape().as_list(),
'W_fc_t:', W_fc_t.get_shape().as_list(),
'b_fc_t:', b_fc_t.get_shape().as_list(),
'h_fc_dec:', h_fc_dec.get_shape().as_list())
if convolutional:
if debug:
h_tensor = tf.reshape(
h_fc_dec, [dims[0], dims[1], dims[2], dims[3]])
else:
h_tensor = tf.reshape(
h_fc_dec, tf.pack([tf.shape(x)[0], dims[1], dims[2], dims[3]]))
else:
h_tensor = h_fc_dec
shapes.reverse()
n_filters.reverse()
print('* Reshape')
print(h_fc_dec.get_shape().as_list(),
'->', h_tensor.get_shape().as_list())
## %%
## Decoding layers
current_input = h_tensor
for layer_i, n_output in enumerate(n_filters[:-1][::-1]):
n_input = n_filters[layer_i]
n_output = n_filters[layer_i + 1]
shape = shapes[layer_i]
if convolutional:
W = weight_variable([
filter_sizes[layer_i],
filter_sizes[layer_i],
n_output, n_input])
b = bias_variable([n_output])
if debug:
output = activation(tf.add(
tf.nn.deconv2d(
current_input, W,
shape,
strides=[1, 2, 2, 1], padding='SAME'), b))
else:
output = activation(tf.add(
tf.nn.deconv2d(
current_input, W,
tf.pack(
[tf.shape(x)[0], shape[1], shape[2], shape[3]]),
strides=[1, 2, 2, 1], padding='SAME'), b))
else:
W = weight_variable([n_input, n_output])
b = bias_variable([n_output])
output = activation(tf.matmul(current_input, W) + b)
print('in:', current_input.get_shape().as_list(),
'W:', W.get_shape().as_list(),
'b:', b.get_shape().as_list(),
'out:', output.get_shape().as_list())
current_input = output
# %%
# Now have the reconstruction through the network
y_tensor = current_input
y = tf.reshape(y_tensor, tf.pack([tf.shape(x)[0], input_shape[1]]))
print('* Output')
print('Y:', y_tensor.get_shape().as_list())
# %%
# Log Prior: D_KL(q(z|x)||p(z))
# Equation 10
prior_loss = 0.5 * tf.reduce_sum(
1.0 + 2.0 * log_sigma - tf.pow(mu, 2.0) - tf.exp(2.0 * log_sigma))
# Reconstruction Cost
recon_loss = tf.reduce_sum(tf.abs(y_tensor - x_tensor))
# Total cost
loss = recon_loss - prior_loss
# log_px_given_z = normal2(x, mu, log_sigma)
# loss = (log_pz + log_px_given_z - log_qz_given_x).sum()
return {'cost': loss, 'x': x, 'z': z, 'y': y}
def VAE(input_shape=[None, 784],
n_components_encoder=2048,
n_components_decoder=2048,
n_hidden=2,
debug=False):
# %%
# Input placeholder
if debug:
input_shape = [50, 784]
x = tf.Variable(np.zeros((input_shape), dtype=np.float32))
else:
x = tf.placeholder(tf.float32, input_shape)
activation = tf.nn.softplus
dims = x.get_shape().as_list()
n_features = dims[1]
W_enc1 = weight_variable([n_features, n_components_encoder])
b_enc1 = bias_variable([n_components_encoder])
h_enc1 = activation(tf.matmul(x, W_enc1) + b_enc1)
W_enc2 = weight_variable([n_components_encoder, n_components_encoder])
b_enc2 = bias_variable([n_components_encoder])
h_enc2 = activation(tf.matmul(h_enc1, W_enc2) + b_enc2)
W_enc3 = weight_variable([n_components_encoder, n_components_encoder])
b_enc3 = bias_variable([n_components_encoder])
h_enc3 = activation(tf.matmul(h_enc2, W_enc3) + b_enc3)
W_mu = weight_variable([n_components_encoder, n_hidden])
b_mu = bias_variable([n_hidden])
W_log_sigma = weight_variable([n_components_encoder, n_hidden])
b_log_sigma = bias_variable([n_hidden])
z_mu = tf.matmul(h_enc3, W_mu) + b_mu
z_log_sigma = 0.5 * (tf.matmul(h_enc3, W_log_sigma) + b_log_sigma)
# %%
# Sample from noise distribution p(eps) ~ N(0, 1)
if debug:
epsilon = tf.random_normal(
[dims[0], n_hidden])
else:
epsilon = tf.random_normal(
tf.pack([tf.shape(x)[0], n_hidden]))
# Sample from posterior
z = z_mu + tf.exp(z_log_sigma) * epsilon
W_dec1 = weight_variable([n_hidden, n_components_decoder])
b_dec1 = bias_variable([n_components_decoder])
h_dec1 = activation(tf.matmul(z, W_dec1) + b_dec1)
W_dec2 = weight_variable([n_components_decoder, n_components_decoder])
b_dec2 = bias_variable([n_components_decoder])
h_dec2 = activation(tf.matmul(h_dec1, W_dec2) + b_dec2)
W_dec3 = weight_variable([n_components_decoder, n_components_decoder])
b_dec3 = bias_variable([n_components_decoder])
h_dec3 = activation(tf.matmul(h_dec2, W_dec3) + b_dec3)
W_mu_dec = weight_variable([n_components_decoder, n_features])
b_mu_dec = bias_variable([n_features])
y = tf.nn.tanh(tf.matmul(h_dec3, W_mu_dec) + b_mu_dec)
# p(x|z)
log_px_given_z = -tf.reduce_sum(
x * tf.log(y + 1e-10) +
(1 - x) * tf.log(1 - y + 1e-10), 1)
# d_kl(q(z|x)||p(z))
# Appendix B: 0.5 * sum(1 + log(sigma^2) - mu^2 - sigma^2)
kl_div = -0.5 * tf.reduce_sum(
1.0 + 2.0 * z_log_sigma - tf.square(z_mu) - tf.exp(2.0 * z_log_sigma),
1)
loss = tf.reduce_mean(log_px_given_z + kl_div)
return {'cost': loss, 'x': x, 'z': z, 'y': y}
def VAE(input_shape=[None, 784],
n_filters=[1, 64, 128, 128],
filter_sizes=[3, 3, 3, 3],
n_hidden=512,
n_code=2,
activation=tf.nn.relu,
convolutional=True,
debug=False):
# %%
# Input placeholder
if debug:
input_shape = [50, 784]
x = tf.Variable(np.zeros((input_shape), dtype=np.float32))
else:
x = tf.placeholder(tf.float32, input_shape, 'x')
# %%
# ensure 2-d is converted to square tensor.
if convolutional:
if len(x.get_shape()) == 2:
x_dim = np.sqrt(x.get_shape().as_list()[1])
if x_dim != int(x_dim):
raise ValueError('Unsupported input dimensions')
x_dim = int(x_dim)
x_tensor = tf.reshape(
x, [-1, x_dim, x_dim, 1])
elif len(x.get_shape()) == 4:
x_tensor = x
else:
raise ValueError('Unsupported input dimensions')
else:
x_tensor = x
current_input = x_tensor
print('* Input')
print('X:', current_input.get_shape().as_list())
# %%
# Build the encoder
shapes = []
print('* Encoder')
for layer_i, n_input in enumerate(n_filters[:-1]):
n_output = n_filters[layer_i + 1]
shapes.append(current_input.get_shape().as_list())
if convolutional:
n_input = shapes[-1][3]
W = weight_variable([
filter_sizes[layer_i],
filter_sizes[layer_i],
n_input, n_output])
b = bias_variable([n_output])
output = activation(
tf.add(tf.nn.conv2d(
current_input, W,
strides=[1, 2, 2, 1], padding='SAME'), b))
else:
W = weight_variable([n_input, n_output])
b = bias_variable([n_output])
output = activation(tf.matmul(current_input, W) + b)
print('in:', current_input.get_shape().as_list(),
'W:', W.get_shape().as_list(),
'b:', b.get_shape().as_list(),
'out:', output.get_shape().as_list())
current_input = output
dims = current_input.get_shape().as_list()
if convolutional:
# %%
# Flatten and build latent layer as means and standard deviations
size = (dims[1] * dims[2] * dims[3])
flattened = tf.reshape(current_input, [dims[0], size]
if debug else tf.pack([tf.shape(current_input)[0], size]))
else:
size = dims[1]
flattened = current_input
print('* Reshape')
print(current_input.get_shape().as_list(),
'->', flattened.get_shape().as_list())
print('* FC Layer')
W_fc = weight_variable([size, n_hidden])
b_fc = bias_variable([n_hidden])
h = activation(tf.matmul(flattened, W_fc) + b_fc)
print('in:', current_input.get_shape().as_list(),
'W_fc:', W_fc.get_shape().as_list(),
'b_fc:', b_fc.get_shape().as_list(),
'h:', h.get_shape().as_list())
print('* Variational Autoencoder')
W_mu = weight_variable([n_hidden, n_code])
b_mu = bias_variable([n_code])
W_sigma = weight_variable([n_hidden, n_code])
b_sigma = bias_variable([n_code])
z_mu = tf.matmul(h, W_mu) + b_mu
z_log_sigma = 0.5 * tf.matmul(h, W_sigma) + b_sigma
print('in:', h.get_shape().as_list(),
'W_mu:', W_mu.get_shape().as_list(),
'b_mu:', b_mu.get_shape().as_list(),
'mu:', z_mu.get_shape().as_list())
print('in:', h.get_shape().as_list(),
'W_sigma:', W_sigma.get_shape().as_list(),
'b_sigma:', b_sigma.get_shape().as_list(),
'log_sigma:', z_log_sigma.get_shape().as_list())
# %%
# Sample from noise distribution p(eps) ~ N(0, 1)
if debug:
epsilon = tf.random_normal(
[dims[0], n_code])
else:
epsilon = tf.random_normal(
tf.pack([tf.shape(x)[0], n_code]))
# Sample from posterior
z = z_mu + tf.mul(epsilon, tf.exp(z_log_sigma))
print('z:', z.get_shape().as_list())
print('* Decoder')
W_dec = weight_variable([n_code, n_hidden])
b_dec = bias_variable([n_hidden])
h_dec = activation(tf.matmul(z, W_dec) + b_dec)
print('in:', z.get_shape().as_list(),
'W_dec:', W_dec.get_shape().as_list(),
'b_dec:', b_dec.get_shape().as_list(),
'h_dec:', h_dec.get_shape().as_list())
W_fc_t = weight_variable([n_hidden, size])
b_fc_t = bias_variable([size])
h_fc_dec = activation(tf.matmul(h_dec, W_fc_t) + b_fc_t)
print('in:', h_dec.get_shape().as_list(),
'W_fc_t:', W_fc_t.get_shape().as_list(),
'b_fc_t:', b_fc_t.get_shape().as_list(),
'h_fc_dec:', h_fc_dec.get_shape().as_list())
if convolutional:
h_tensor = tf.reshape(
h_fc_dec, [dims[0], dims[1], dims[2], dims[3]] if debug
else tf.pack([tf.shape(h_dec)[0], dims[1], dims[2], dims[3]]))
else:
h_tensor = h_fc_dec
shapes.reverse()
n_filters.reverse()
print('* Reshape')
print(h_fc_dec.get_shape().as_list(),
'->', h_tensor.get_shape().as_list())
# %%
# Decoding layers
current_input = h_tensor
for layer_i, n_output in enumerate(n_filters[:-1][::-1]):
n_input = n_filters[layer_i]
n_output = n_filters[layer_i + 1]
shape = shapes[layer_i]
if convolutional:
W = weight_variable([
filter_sizes[layer_i],
filter_sizes[layer_i],
n_output, n_input])
b = bias_variable([n_output])
output = activation(tf.add(
tf.nn.conv2d_transpose(
current_input, W,
shape if debug else
tf.pack(
[tf.shape(current_input)[0], shape[1],
shape[2], shape[3]]),
strides=[1, 2, 2, 1], padding='SAME'), b))
else:
W = weight_variable([n_input, n_output])
b = bias_variable([n_output])
output = activation(tf.matmul(current_input, W) + b)
print('in:', current_input.get_shape().as_list(),
'W:', W.get_shape().as_list(),
'b:', b.get_shape().as_list(),
'out:', output.get_shape().as_list())
current_input = output
dec_flat = tf.reshape(
current_input, tf.pack([tf.shape(current_input)[0], input_shape[1]]))
# %%
# An extra fc layer and nonlinearity
W_fc_final = weight_variable([input_shape[1], input_shape[1]])
b_fc_final = bias_variable([input_shape[1]])
y = tf.nn.sigmoid(tf.matmul(dec_flat, W_fc_final) + b_fc_final)
# p(x|z)
log_px_given_z = -tf.reduce_sum(
x * tf.log(y + 1e-10) +
(1 - x) * tf.log(1 - y + 1e-10), 1)
# d_kl(q(z|x)||p(z))
# Appendix B: 0.5 * sum(1 + log(sigma^2) - mu^2 - sigma^2)
kl_div = -0.5 * tf.reduce_sum(
1.0 + 2.0 * z_log_sigma - tf.square(z_mu) - tf.exp(2.0 * z_log_sigma),
1)
loss = tf.reduce_mean(log_px_given_z + kl_div)
return {'cost': loss, 'x': x, 'z': z, 'y': y}