def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
dataset='mnist.pkl.gz',
nkerns=[20, 50], batch_size=500):
""" Demonstrates lenet on MNIST dataset
:type learning_rate: float
:param learning_rate: learning rate used (factor for the stochastic
gradient)
:type n_epochs: int
:param n_epochs: maximal number of epochs to run the optimizer
:type dataset: string
:param dataset: path to the dataset used for training /testing (MNIST here)
:type nkerns: list of ints
:param nkerns: number of kernels on each layer
"""
rng = numpy.random.RandomState(23455)
br = BatchReader.inputs()
br2 = BatchReader.inputs(testingData = True)
X, Y = br.getNPArray(2)
train_set_x = theano.shared(X[0:50000*0.6].astype(float))
train_set_y = theano.shared(Y[0:50000*0.6].astype('int32'))
valid_set_x = theano.shared(X[50000*0.6:50000*0.9].astype(float))
valid_set_y = theano.shared(Y[50000*0.6:50000*0.9].astype('int32'))
test_set_x = theano.shared(X[50000*0.9:50000].astype(float))
test_set_y = theano.shared(Y[50000*0.9:50000].astype('int32'))
#datasets = load_data(dataset)
#train_set_x, train_set_y = datasets[0]
#valid_set_x, valid_set_y = datasets[1]
#test_set_x, test_set_y = datasets[2]
# compute number of minibatches for training, validation and testing
n_train_batches = train_set_x.get_value(borrow=True).shape[0]
n_valid_batches = valid_set_x.get_value(borrow=True).shape[0]
n_test_batches = test_set_x.get_value(borrow=True).shape[0]
n_train_batches /= batch_size
n_valid_batches /= batch_size
n_test_batches /= batch_size
# allocate symbolic variables for the data
index = T.lscalar() # index to a [mini]batch
# start-snippet-1
x = T.matrix('x') # the data is presented as rasterized images
y = T.ivector('y') # the labels are presented as 1D vector of
# [int] labels
######################
# BUILD ACTUAL MODEL #
######################
print '... building the model'
# Reshape matrix of rasterized images of shape (batch_size, 28 * 28)
# to a 4D tensor, compatible with our LeNetConvPoolLayer
# (28, 28) is the size of MNIST images.
layer0_input = x.reshape((batch_size, 1, 48, 48))
# Construct the first convolutional pooling layer:
# filtering reduces the image size to (28-5+1 , 28-5+1) = (24, 24)
# maxpooling reduces this further to (24/2, 24/2) = (12, 12)
# 4D output tensor is thus of shape (batch_size, nkerns[0], 12, 12)
layer0 = LeNetConvPoolLayer(
rng,
input=layer0_input,
image_shape=(batch_size, 1, 48, 48),
filter_shape=(nkerns[0], 1, 9, 9),
poolsize=(2, 2)
)
# Construct the second convolutional pooling layer
# filtering reduces the image size to (12-5+1, 12-5+1) = (8, 8)
# maxpooling reduces this further to (8/2, 8/2) = (4, 4)
# 4D output tensor is thus of shape (batch_size, nkerns[1], 4, 4)
layer1 = LeNetConvPoolLayer(
rng,
input=layer0.output,
image_shape=(batch_size, nkerns[0], 20, 20),
filter_shape=(nkerns[1], nkerns[0], 8, 8),
poolsize=(2, 2)
)
# the HiddenLayer being fully-connected, it operates on 2D matrices of
# shape (batch_size, num_pixels) (i.e matrix of rasterized images).
# This will generate a matrix of shape (batch_size, nkerns[1] * 4 * 4),
# or (500, 50 * 4 * 4) = (500, 800) with the default values.
layer2_input = layer1.output.flatten(2)
# construct a fully-connected sigmoidal layer
layer2 = HiddenLayer(
rng,
input=layer2_input,
n_in=nkerns[1] * 6 * 6,
n_out=500,
activation=T.tanh
)
# classify the values of the fully-connected sigmoidal layer
layer3 = LogisticRegression(input=layer2.output, n_in=500, n_out=10)
# the cost we minimize during training is the NLL of the model
cost = layer3.negative_log_likelihood(y)
print type(test_set_x)
# create a function to compute the mistakes that are made by the model
test_model = theano.function(
[index],
layer3.errors(y),
givens={
x: test_set_x[index * batch_size: (index + 1) * batch_size],
y: test_set_y[index * batch_size: (index + 1) * batch_size]
}
)
validate_model = theano.function(
[index],
layer3.errors(y),
givens={
x: valid_set_x[index * batch_size: (index + 1) * batch_size],
y: valid_set_y[index * batch_size: (index + 1) * batch_size]
}
)
# create a list of all model parameters to be fit by gradient descent
params = layer3.params + layer2.params + layer1.params + layer0.params
# create a list of gradients for all model parameters
grads = T.grad(cost, params)
# train_model is a function that updates the model parameters by
# SGD Since this model has many parameters, it would be tedious to
# manually create an update rule for each model parameter. We thus
# create the updates list by automatically looping over all
# (params[i], grads[i]) pairs.
updates = [
(param_i, param_i - learning_rate * grad_i)
for param_i, grad_i in zip(params, grads)
]
train_model = theano.function(
[index],
cost,
updates=updates,
givens={
x: train_set_x[index * batch_size: (index + 1) * batch_size],
y: train_set_y[index * batch_size: (index + 1) * batch_size]
}
)
# end-snippet-1
###############
# TRAIN MODEL #
###############
print '... training'
# early-stopping parameters
patience = 10000 # look as this many examples regardless
patience_increase = 2 # wait this much longer when a new best is
# found
improvement_threshold = 0.995 # a relative improvement of this much is
# considered significant
validation_frequency = min(n_train_batches, patience / 2)
# go through this many
# minibatche before checking the network
# on the validation set; in this case we
# check every epoch
best_validation_loss = numpy.inf
best_iter = 0
test_score = 0.
start_time = timeit.default_timer()
epoch = 0
done_looping = False
while (epoch < n_epochs) and (not done_looping):
epoch = epoch + 1
for minibatch_index in xrange(n_train_batches):
iter = (epoch - 1) * n_train_batches + minibatch_index
if iter % 100 == 0:
print 'training @ iter = ', iter
cost_ij = train_model(minibatch_index)
if (iter + 1) % validation_frequency == 0:
# compute zero-one loss on validation set
validation_losses = [validate_model(i) for i
in xrange(n_valid_batches)]
this_validation_loss = numpy.mean(validation_losses)
print('epoch %i, minibatch %i/%i, validation error %f %%' %
(epoch, minibatch_index + 1, n_train_batches,
this_validation_loss * 100.))
# if we got the best validation score until now
if this_validation_loss < best_validation_loss:
#improve patience if loss improvement is good enough
if this_validation_loss < best_validation_loss * \
improvement_threshold:
patience = max(patience, iter * patience_increase)
# save best validation score and iteration number
best_validation_loss = this_validation_loss
best_iter = iter
# test it on the test set
test_losses = [
test_model(i)
for i in xrange(n_test_batches)
]
test_score = numpy.mean(test_losses)
print((' epoch %i, minibatch %i/%i, test error of '
'best model %f %%') %
(epoch, minibatch_index + 1, n_train_batches,
test_score * 100.))
if patience <= iter:
done_looping = True
break
end_time = timeit.default_timer()
print('Optimization complete.')
print('Best validation score of %f %% obtained at iteration %i, '
'with test performance %f %%' %
(best_validation_loss * 100., best_iter + 1, test_score * 100.))
print >> sys.stderr, ('The code for file ' +
os.path.split(__file__)[1] +
' ran for %.2fm' % ((end_time - start_time) / 60.))
print "Dumping parameters to ../data/convnet.pkl"
dir = os.getcwd()
path = os.path.join(dir,"../data")
os.chdir(path)
with open( "convnet.pkl" , 'wb') as file:
dict = {
"layer0" : layer0.param,
"layer1" : layer1.param,
"layer2" : layer2.param,
"layer3" : layer3.param
}
pickle.dump(dict, file, 2 )
os.chdir(dir)
def evaluate_lenet5(learning_rate=0.1,
n_epochs=200,
dataset='mnist.pkl.gz',
nkerns=[20, 50],
batch_size=500):
""" Demonstrates lenet on MNIST dataset
:type learning_rate: float
:param learning_rate: learning rate used (factor for the stochastic
gradient)
:type n_epochs: int
:param n_epochs: maximal number of epochs to run the optimizer
:type dataset: string
:param dataset: path to the dataset used for training /testing (MNIST here)
:type nkerns: list of ints
:param nkerns: number of kernels on each layer
"""
rng = numpy.random.RandomState(23455)
br = BatchReader.inputs()
br2 = BatchReader.inputs(testingData=True)
X, Y = br.getNPArray(2)
train_set_x = theano.shared(X[0:50000 * 0.6].astype(float))
train_set_y = theano.shared(Y[0:50000 * 0.6].astype('int32'))
valid_set_x = theano.shared(X[50000 * 0.6:50000 * 0.9].astype(float))
valid_set_y = theano.shared(Y[50000 * 0.6:50000 * 0.9].astype('int32'))
test_set_x = theano.shared(X[50000 * 0.9:50000].astype(float))
test_set_y = theano.shared(Y[50000 * 0.9:50000].astype('int32'))
#datasets = load_data(dataset)
#train_set_x, train_set_y = datasets[0]
#valid_set_x, valid_set_y = datasets[1]
#test_set_x, test_set_y = datasets[2]
# compute number of minibatches for training, validation and testing
n_train_batches = train_set_x.get_value(borrow=True).shape[0]
n_valid_batches = valid_set_x.get_value(borrow=True).shape[0]
n_test_batches = test_set_x.get_value(borrow=True).shape[0]
n_train_batches /= batch_size
n_valid_batches /= batch_size
n_test_batches /= batch_size
# allocate symbolic variables for the data
index = T.lscalar() # index to a [mini]batch
# start-snippet-1
x = T.matrix('x') # the data is presented as rasterized images
y = T.ivector('y') # the labels are presented as 1D vector of
# [int] labels
######################
# BUILD ACTUAL MODEL #
######################
print '... building the model'
# Reshape matrix of rasterized images of shape (batch_size, 28 * 28)
# to a 4D tensor, compatible with our LeNetConvPoolLayer
# (28, 28) is the size of MNIST images.
layer0_input = x.reshape((batch_size, 1, 48, 48))
# Construct the first convolutional pooling layer:
# filtering reduces the image size to (28-5+1 , 28-5+1) = (24, 24)
# maxpooling reduces this further to (24/2, 24/2) = (12, 12)
# 4D output tensor is thus of shape (batch_size, nkerns[0], 12, 12)
layer0 = LeNetConvPoolLayer(rng,
input=layer0_input,
image_shape=(batch_size, 1, 48, 48),
filter_shape=(nkerns[0], 1, 9, 9),
poolsize=(2, 2))
# Construct the second convolutional pooling layer
# filtering reduces the image size to (12-5+1, 12-5+1) = (8, 8)
# maxpooling reduces this further to (8/2, 8/2) = (4, 4)
# 4D output tensor is thus of shape (batch_size, nkerns[1], 4, 4)
layer1 = LeNetConvPoolLayer(rng,
input=layer0.output,
image_shape=(batch_size, nkerns[0], 20, 20),
filter_shape=(nkerns[1], nkerns[0], 8, 8),
poolsize=(2, 2))
# the HiddenLayer being fully-connected, it operates on 2D matrices of
# shape (batch_size, num_pixels) (i.e matrix of rasterized images).
# This will generate a matrix of shape (batch_size, nkerns[1] * 4 * 4),
# or (500, 50 * 4 * 4) = (500, 800) with the default values.
layer2_input = layer1.output.flatten(2)
# construct a fully-connected sigmoidal layer
layer2 = HiddenLayer(rng,
input=layer2_input,
n_in=nkerns[1] * 6 * 6,
n_out=500,
activation=T.tanh)
# classify the values of the fully-connected sigmoidal layer
layer3 = LogisticRegression(input=layer2.output, n_in=500, n_out=10)
# the cost we minimize during training is the NLL of the model
cost = layer3.negative_log_likelihood(y)
print type(test_set_x)
# create a function to compute the mistakes that are made by the model
test_model = theano.function(
[index],
layer3.errors(y),
givens={
x: test_set_x[index * batch_size:(index + 1) * batch_size],
y: test_set_y[index * batch_size:(index + 1) * batch_size]
})
validate_model = theano.function(
[index],
layer3.errors(y),
givens={
x: valid_set_x[index * batch_size:(index + 1) * batch_size],
y: valid_set_y[index * batch_size:(index + 1) * batch_size]
})
# create a list of all model parameters to be fit by gradient descent
params = layer3.params + layer2.params + layer1.params + layer0.params
# create a list of gradients for all model parameters
grads = T.grad(cost, params)
# train_model is a function that updates the model parameters by
# SGD Since this model has many parameters, it would be tedious to
# manually create an update rule for each model parameter. We thus
# create the updates list by automatically looping over all
# (params[i], grads[i]) pairs.
updates = [(param_i, param_i - learning_rate * grad_i)
for param_i, grad_i in zip(params, grads)]
train_model = theano.function(
[index],
cost,
updates=updates,
givens={
x: train_set_x[index * batch_size:(index + 1) * batch_size],
y: train_set_y[index * batch_size:(index + 1) * batch_size]
})
# end-snippet-1
###############
# TRAIN MODEL #
###############
print '... training'
# early-stopping parameters
patience = 10000 # look as this many examples regardless
patience_increase = 2 # wait this much longer when a new best is
# found
improvement_threshold = 0.995 # a relative improvement of this much is
# considered significant
validation_frequency = min(n_train_batches, patience / 2)
# go through this many
# minibatche before checking the network
# on the validation set; in this case we
# check every epoch
best_validation_loss = numpy.inf
best_iter = 0
test_score = 0.
start_time = timeit.default_timer()
epoch = 0
done_looping = False
while (epoch < n_epochs) and (not done_looping):
epoch = epoch + 1
for minibatch_index in xrange(n_train_batches):
iter = (epoch - 1) * n_train_batches + minibatch_index
if iter % 100 == 0:
print 'training @ iter = ', iter
cost_ij = train_model(minibatch_index)
if (iter + 1) % validation_frequency == 0:
# compute zero-one loss on validation set
validation_losses = [
validate_model(i) for i in xrange(n_valid_batches)
]
this_validation_loss = numpy.mean(validation_losses)
print('epoch %i, minibatch %i/%i, validation error %f %%' %
(epoch, minibatch_index + 1, n_train_batches,
this_validation_loss * 100.))
# if we got the best validation score until now
if this_validation_loss < best_validation_loss:
#improve patience if loss improvement is good enough
if this_validation_loss < best_validation_loss * \
improvement_threshold:
patience = max(patience, iter * patience_increase)
# save best validation score and iteration number
best_validation_loss = this_validation_loss
best_iter = iter
# test it on the test set
test_losses = [
test_model(i) for i in xrange(n_test_batches)
]
test_score = numpy.mean(test_losses)
print((' epoch %i, minibatch %i/%i, test error of '
'best model %f %%') %
(epoch, minibatch_index + 1, n_train_batches,
test_score * 100.))
if patience <= iter:
done_looping = True
break
end_time = timeit.default_timer()
print('Optimization complete.')
print(
'Best validation score of %f %% obtained at iteration %i, '
'with test performance %f %%' %
(best_validation_loss * 100., best_iter + 1, test_score * 100.))
print >> sys.stderr, ('The code for file ' + os.path.split(__file__)[1] +
' ran for %.2fm' % ((end_time - start_time) / 60.))
print "Dumping parameters to ../data/convnet.pkl"
dir = os.getcwd()
path = os.path.join(dir, "../data")
os.chdir(path)
with open("convnet.pkl", 'wb') as file:
dict = {
"layer0": layer0.param,
"layer1": layer1.param,
"layer2": layer2.param,
"layer3": layer3.param
}
pickle.dump(dict, file, 2)
os.chdir(dir)
for angle in range(0,360,60):
y_k.append(self.eval_net(
self.rotate( x[k*self.batch_size:(k+1)*self.batch_size],angle)
)
)
y_i.append(np.float32(y_k).mean(axis=0))
y = np.vstack(y_i)
return y
if __name__ == '__main__':
rng = numpy.random.RandomState(42)
br = BatchReader.inputs()
br2 = BatchReader.inputs(testingData = True)
X, Y = br.getNPArray(2)
testX = br2.getNPArray(2)
nkerns = [35,70,35]
print X.shape, Y.shape
print testX.shape
n_examples = X.shape[0]
fs = foldsize = n_examples/K_FOLD
# k folds
for k in range(K_FOLD):
trainX = np.vstack(
print(__doc__)
from sklearn import neighbors, linear_model
import BatchReader
reader = BatchReader.inputs()
array = reader.getNPArray(7809)
X_digits = array[0]
y_digits = array[1]
n_samples = len(X_digits)
X_train = X_digits[:.9*n_samples]
y_train = y_digits[:.9*n_samples]
X_test = X_digits[.9*n_samples:]
y_test = y_digits[.9*n_samples:]
logistic = linear_model.LogisticRegression()
print('LogisticRegression score: %f' % logistic.fit(X_train, y_train).score(X_test,y_test))
y_k = []
for angle in range(0, 360, 60):
y_k.append(
self.eval_net(
self.rotate(
x[k * self.batch_size:(k + 1) * self.batch_size],
angle)))
y_i.append(np.float32(y_k).mean(axis=0))
y = np.vstack(y_i)
return y
if __name__ == '__main__':
rng = numpy.random.RandomState(42)
br = BatchReader.inputs()
br2 = BatchReader.inputs(testingData=True)
X, Y = br.getNPArray(2)
testX = br2.getNPArray(2)
nkerns = [35, 70, 35]
print X.shape, Y.shape
print testX.shape
n_examples = X.shape[0]
fs = foldsize = n_examples / K_FOLD
# k folds
for k in range(K_FOLD):
trainX = np.vstack([X[:k * fs], X[(k + 1) * fs:]])
