Python CoorFunc.genomeCoor2transCoor Examples

Example #1

File: ParseTrans.py Project: zhangtong516/GAP

 def genomeCoor2transCoor(self, chrID, start, end, strand):
     """
     chrID               -- Chromosome id
     start               -- Chromosome-based start position
     end                 -- Chromosome-based end position
     strand              -- Chromosome strand
     
     Convert genome-based coordinates to transcript-based coordinates
     Return [ [chrID, chrStart, chrEnd, transID, transStart, transEnd], ... ]
     """
     TransBin = self.getTransBin()
     return CoorFunc.genomeCoor2transCoor(TransBin, self, chrID, start, end, strand)

Example #2

 def genomeCoor2transCoor(self, Chr, Start, End, Strand):
     TransBin = self.getTransBin()
     return CoorFunc.genomeCoor2transCoor(TransBin, self, Chr, Start, End,
                                          Strand)

Example #3

File: ParseTrans.py Project: Tsinghua-gongjing/test

 def genomeCoor2transCoor(self, Chr, Start, End, Strand):
     TransBin = self.getTransBin()
     return CoorFunc.genomeCoor2transCoor(TransBin, self, Chr, Start, End, Strand)