def genomeCoor2transCoor(self, chrID, start, end, strand):
"""
chrID -- Chromosome id
start -- Chromosome-based start position
end -- Chromosome-based end position
strand -- Chromosome strand
Convert genome-based coordinates to transcript-based coordinates
Return [ [chrID, chrStart, chrEnd, transID, transStart, transEnd], ... ]
"""
TransBin = self.getTransBin()
return CoorFunc.genomeCoor2transCoor(TransBin, self, chrID, start, end, strand)
def genomeCoor2transCoor(self, Chr, Start, End, Strand):
TransBin = self.getTransBin()
return CoorFunc.genomeCoor2transCoor(TransBin, self, Chr, Start, End,
Strand)
def genomeCoor2transCoor(self, Chr, Start, End, Strand):
TransBin = self.getTransBin()
return CoorFunc.genomeCoor2transCoor(TransBin, self, Chr, Start, End, Strand)