Python PipelineLncRNA.gtfToBed12 Examples

Example #1

File: pipeline_rnaseqlncrna.py Project: Charlie-George/cgat

def convertGTFToBed12(infile, outfile):
    """
    Transform the lncrna_final.gtf.gz into lncrna_final.bed
    """
    PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")

Example #2

def convertControlGTFToBed12(infile, outfile):
    """
    Convert either ensembl lincRNA, or control gtf to bed12 format
    """
    PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")

Example #3

File: pipeline_rnaseqlncrna.py Project: Charlie-George/cgat

def convertControlGTFToBed12(infile, outfile):
    """
    Convert either ensembl lincRNA, or control gtf to bed12 format
    """
    PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")

Example #4

def convertGTFToBed12(infile, outfile):
    """
    Transform the lncrna_final.gtf.gz into lncrna_final.bed
    """
    PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")