def loadFastqc(infile, outfile): '''load FASTQC stats into database.''' track = P.snip(infile, ".fastqc") filename = os.path.join(PARAMS["exportdir"], "fastqc", track + "*_fastqc", "fastqc_data.txt") PipelineReadqc.loadFastqc(filename, database_url=PARAMS["database"]["url"]) IOTools.touch_file(outfile)
def loadFastqc(infile, outfile): '''load FASTQC stats into database.''' track = P.snip(infile, ".fastqc") filename = os.path.join( PARAMS["exportdir"], "fastqc", track + "*_fastqc", "fastqc_data.txt") PipelineReadqc.loadFastqc(filename, backend=PARAMS["database_backend"], database=PARAMS["database_name"], host=PARAMS["database_host"], username=PARAMS["database_username"], password=PARAMS["database_password"], port=PARAMS["database_port"]) P.touch(outfile)
def loadFastqc(infile, outfile): '''load FASTQC stats into database.''' track = P.snip(infile.replace("processed.dir/", ""), ".fastqc") filename = os.path.join( PARAMS["exportdir"], "fastqc", track + "*_fastqc", "fastqc_data.txt") PipelineReadqc.loadFastqc(filename, backend=PARAMS["database_backend"], database=PARAMS["database_name"], host=PARAMS["database_host"], username=PARAMS["database_username"], password=PARAMS["database_password"], port=PARAMS["database_port"]) P.touch(outfile)