def loadFastqc(infile, outfile):
'''load FASTQC stats into database.'''
track = P.snip(infile, ".fastqc")
filename = os.path.join(PARAMS["exportdir"], "fastqc", track + "*_fastqc",
"fastqc_data.txt")
PipelineReadqc.loadFastqc(filename, database_url=PARAMS["database"]["url"])
IOTools.touch_file(outfile)
def loadFastqc(infile, outfile):
'''load FASTQC stats into database.'''
track = P.snip(infile, ".fastqc")
filename = os.path.join(
PARAMS["exportdir"], "fastqc", track + "*_fastqc", "fastqc_data.txt")
PipelineReadqc.loadFastqc(filename,
backend=PARAMS["database_backend"],
database=PARAMS["database_name"],
host=PARAMS["database_host"],
username=PARAMS["database_username"],
password=PARAMS["database_password"],
port=PARAMS["database_port"])
P.touch(outfile)
def loadFastqc(infile, outfile):
'''load FASTQC stats into database.'''
track = P.snip(infile.replace("processed.dir/", ""), ".fastqc")
filename = os.path.join(
PARAMS["exportdir"], "fastqc", track + "*_fastqc", "fastqc_data.txt")
PipelineReadqc.loadFastqc(filename,
backend=PARAMS["database_backend"],
database=PARAMS["database_name"],
host=PARAMS["database_host"],
username=PARAMS["database_username"],
password=PARAMS["database_password"],
port=PARAMS["database_port"])
P.touch(outfile)
