def test_get_codon_negative_hard(self): SOX18_uid = get_all_transcripts("SOX18", "grch38")[0]["qualifiers"]["uid"] SOX18 = Transcript(SOX18_uid, "grch38") codon = SOX18.get_codon_from_pos(64048168) self.assertEqual(codon[0], "GGC") self.assertEqual(codon[1], 2) self.assertEqual(codon[2], -1)
def test_get_codon_positive_medium(self): XKR8_uid = get_all_transcripts("XKR8", "grch38")[0]["qualifiers"]["uid"] XKR8 = Transcript(XKR8_uid, "grch38") codon = XKR8.get_codon_from_pos(27963497) self.assertEqual(codon[0], "TGC") self.assertEqual(codon[1], 0) self.assertEqual(codon[2], 1)