def map_to_owl(json_data):
for d in json_data:
"""mapping json data to ontology properties"""
name = Preprocessor.toolname_underline(d['name'])
# name = re.sub("[()-*,/]", " ", name).strip()
executable = Preprocessor.normalize("saga_cmd ", d['command']['exec'])
keywords = d['keywords']
toolClass = tool_class(keywords)
if onto[name]:
# if has the same name and executable
if onto[name].executable == executable:
onto[name].is_a.append(toolClass)
continue
else:
name = name + '_' + keywords[0].replace(' ', '_')
tool = toolClass(name,
prefLabel=locstr(re.sub('^(Tool)[0-9: ]+', '',
d['name']),
lang='en'))
# tool = toolClass(Preprocessor.space_2_underline(name), prefLabel=locstr(re.sub('^(Tool)[0-9: ]+', '', d['name']), lang='en'))
tool.isToolOfSoftware.append(cyber.SAGA_GIS)
tool.identifier = name
tool.manualPageURL.append(d['manual_url'])
# task
handle_task(tool, name, d['name'], keywords,
OWLUtils.join_list(d['description']))
tool.executable = executable
tool.commandLine.append(
Preprocessor.normalize("Usage: ", d['command']['cmd_line']))
tool.authors.append(OWLUtils.join_keywords(d['authors']))
for reference in d['references']:
tool.references.append(reference)
# keywords
keywords.append(name.replace('_', ' '))
OWLUtils.link_to_domain_concept(tool, keywords)
# applicaiton category
OWLUtils.application_category(tool, [d['keywords'][0]],
d['keywords'][1], d['keywords'][2:])
tool.description.append(OWLUtils.join_list(d['description']))
if d['parameters']:
for item, itemValue in d['parameters'].items():
if item == 'inputs':
handle_inout(tool, itemValue, 'input')
elif item == 'outputs':
handle_inout(tool, itemValue, 'output')
elif item == 'options':
for optionItem in itemValue:
handle_options(tool, optionItem, onto)
def gen_shacl(json_data):
for d in json_data:
name = Preprocessor.toolname_underline(d['name'])
name = re.sub("[()-*,/]_", " ", name).strip()
if d['parameters']:
for item, itemValue in d['parameters'].items():
if item == 'options':
for optionItem in itemValue:
shape = URIRef(saga_uri + name.replace(" ", '') +
'Shape')
graph.add((shape, RDF.type, sh.ShapeNode))
graph.add(
(shape, sh.TargetNode, URIRef(saga_uri + name)))
shapeGraph = BNode()
def map_to_owl(json_data):
for d in json_data:
toolClass = tool_class(d['category'])
name = Preprocessor.toolname_underline(d['title'])
tool = toolClass(name, prefLabel=locstr(d['title'], lang='en'))
tool.isToolOfSoftware.append(cyber.Whitebox_Tools)
tool.identifier = name
tool.manualPageURL.append('https://github.com/jblindsay/whitebox-tools/blob/master/manual/WhiteboxToolsManual.md')
tool.executable = 'whitebox_tools'
tool.commandLine.append(d['parameter_commandline'][0])
tool.description.append(locstr(d['description'], lang='en'))
keywords = OWLUtils.to_keywords(d['description'])
keywords.extend(d['title'].split(" "))
OWLUtils.link_to_domain_concept(tool, keywords)
handle_task(tool, d['category'], d['title'], d['description'])
OWLUtils.application_category(tool, [], d['category'].replace(' Tools', ''), [])
for parameter in d['parameter']:
handle_parameter(tool, parameter)