Python HillRepressilator Examples

Example #1

def generate_dataset_rep(theta):
    hp = HillRepressilator(alpha=theta[0],alpha0=theta[1], beta=theta[2], n=theta[3])
    ds = hp.run(T=50)
    dataset = np.zeros([data_points, 3])
    for ind, time in enumerate(times):
        dataset[ind, :] = ds[time, :]
    return dataset

Example #2

File: abcinfer.py Project: azardilis/sysbio

def generate_dataset_rep(theta):
    hp = HillRepressilator(alpha=theta[0], alpha0=theta[1], beta=theta[2], n=theta[3])
    ds = hp.run(T=50)
    dataset = np.zeros([data_points, 3])
    for ind, time in enumerate(times):
        dataset[ind, :] = ds[time, :]
    return dataset

Example #3

def generate_dataset_hp(theta):
    hp = HillRepressilator(*theta, n=3.)
    return hp.run(20)[:, 3:]