def choose_action(tree: str, action_name: str, optional: str = None):
if action_name in ["--update", "-u"]:
update(tree)
elif action_name in ["--show", "-sh"]:
phy_tree: PhyTree
if re.match(r'[\S]*\.newick$', tree):
phy_tree = load_tree(tree)
elif re.match(r'\([\S ]+\}\;$', tree):
phy_tree = PhyTree()
try:
phy_tree.parse_string(tree)
except ValueError as e:
print(e)
exit()
else:
print("Post tree as a filename or string")
exit()
visualize_tree(phy_tree.get_newick()[0])
elif action_name in ["--create", "-c"]:
create(tree)
elif action_name in ["--random-tree", "-r"]:
if optional is None:
random_tree(tree)
else:
random_tree(tree, int(optional))
elif action_name in ["--cut"]:
cut(tree)
else:
print("Wrong name function")
def api():
blob = request.get_json()
app.model = update(blob, app.model)
return jsonify({
'model': app.model
})
def main():
#print ''
log.setDebug(util.argv(_cmds['Debug']))
actions.supress(util.argv(_cmds['Supress']))
args = sys.argv
if len(args) == 1:
log.comment(
"No arguments specified, listing your Gists. Try '%s help' if you need help."
% util.fileName)
print('')
del args[0] # Delete the filename
cmd = None
log.debug("Arguments " + str(args))
#--------------------------------------------
# If args[0] is a command. We remove it from the list. args now contains only the command arguments
# else we keep as is and try to evaluate the command
#--------------------------------------------
if _hasCmd(args):
cmd = args[0]
del args[
0] # Delete the command. Arguments remaining are the options for each command
else:
cmd = _deriveCmd(args)
log.debug("Adjusted cmd: " + str(cmd))
log.debug("Adjusted arguments " + str(args))
#--------------------------------------------
# Handle commands
#--------------------------------------------
if cmd == None:
_printNoMatch()
elif cmd in (_cmds['Help']):
actions.help()
elif cmd in (_cmds['List']):
actions.list()
elif cmd in (_cmds['Token']):
actions.updateCredentials()
elif cmd in (_cmds['Open']):
if len(args) == 1:
actions.open(args[0])
else:
_printNoMatch()
elif cmd in (_cmds['View']):
if len(args) == 1:
actions.view(args[0])
elif len(args) == 2:
actions.view(args[0], fileName=args[1])
elif cmd in (_cmds['Download']):
if len(args) == 2:
actions.get(args[0], path=args[1])
elif len(args) == 3:
actions.get(args[0], fileName=args[1], path=args[2])
elif cmd in (_cmds['New']):
# Each option will prompt for public/pvt and description. In silent mode, assumes private and no description.
if len(args) == 0:
actions.new()
elif len(args) == 1:
# create File
# create Content
if util.isFileOrDir(args[0]) == True:
actions.new(filename=args[0])
else:
actions.new(content=args[0])
elif len(args) == 2:
# create Boolean and File
# create Boolean and Content
# create Description and File
# create Description and Content
if util.parseBool(args[0]) != None:
if util.isFileOrDir(args[1]) == True:
actions.new(public=util.parseBool(args[0]),
filename=args[1])
else:
actions.new(public=util.parseBool(args[0]),
content=args[1])
else:
if util.isFileOrDir(args[1]) == True:
actions.new(description=args[0], filename=args[1])
else:
actions.new(description=args[0], content=args[1])
elif len(args) == 3 and util.parseBool(args[0]) != None:
# create Boolean, Description and File
# create Boolean, Description and Content
if util.isFileOrDir(args[2]) == True:
actions.new(public=util.parseBool(args[0]),
description=args[1],
filename=args[2])
else:
actions.new(public=util.parseBool(args[0]),
description=args[1],
content=args[2])
else:
_printNoMatch()
elif cmd in (_cmds['Append']):
# Each option will prompt for public/pvt and description.
if len(args) == 0:
_printNoMatch()
elif len(args) == 2:
# append: id File
# append: id Content
if util.isFileOrDir(args[1]) == True:
actions.append(args[0], filename=args[1])
else:
actions.append(args[0], content=args[1])
elif len(args) == 3:
# append: id Description File
# append: id Description Content
if util.isFileOrDir(args[2]) == True:
actions.append(args[0], description=args[1], filename=args[2])
else:
actions.append(args[0], description=args[1], content=args[2])
else:
actions.append(args[0])
elif cmd in (_cmds['Update']):
# Each option will prompt for public/pvt and description.
if len(args) == 0:
_printNoMatch()
elif len(args) == 2:
# append: id File
# append: id Content
if util.isFileOrDir(args[1]) == True:
actions.update(args[0], filename=args[1])
else:
actions.update(args[0], content=args[1])
elif len(args) == 3:
# append: id Description File
# append: id Description Content
if util.isFileOrDir(args[2]) == True:
actions.update(args[0], description=args[1], filename=args[2])
else:
actions.update(args[0], description=args[1], content=args[2])
else:
actions.update(args[0])
elif cmd in (_cmds['Delete']):
actions.delete(args[0])
elif cmd in (_cmds['Backup']):
_printNoImpl()
actions.backup()
elif cmd in (_cmds['Search']):
_printNoImpl()
actions.search()
else:
_printNoMatch()
log.debug("Done.")
print('')
def update():
print("Update options:")
print("2. Update using batch no.")
print("3. Update using condition")
print("0. Home")
print("1. Medicine Information")
ch = input("Enter your choice: ")
condition = '1=1'
while ch not in '0123' or len(ch) != 1:
ch = input("Invalid choice! Please enter again: ")
if ch == '0':
return 0
elif ch == '1':
return '1'
elif ch == '2':
batch = input("Enter batch no. of stock: ")
while not batch.isdigit():
batch = input(
"Batch no. should be an integer only! Please enter again: ")
condition = f"BatchNo='{batch}'"
elif ch == '3':
print("All columns are: ")
print(actions.get_columns("Stock"))
condition = input(
'Enter condition(<column_name><operator>"<value>"): ')
while True:
try:
cur.execute(f"select 1+2 where {condition}")
cur.fetchall()
break
except Exception as e:
print(e)
condition = input(
'Your condition had above error! Enter again(<column_name><operator>"<value>"): '
)
if ch in '23' and len(ch) == 1:
columns_all = actions.get_columns("Stock")
col_dict = {i + 1: columns_all[i] for i in range(len(columns_all))}
print(col_dict)
column = input("Which column no. do you want to update: ").lower()
while column not in col_dict:
column = input(
"Column you entered is not in table! Enter again: ").lower()
column = col_dict[int(column)]
val = input("Enter value: ")
try:
actions.update("Stock", column, val, condition)
print("Updated successfully...")
except Exception as e:
print("An error occurred!! Error code: 021" if ch ==
'2' else "Your condition had an error!!")
print(e)
traceback.print_exc()
def update():
print("Update options:")
print("2. Update using barcode")
print("3. Update using name")
print("4. Update using condition")
print("0. Home")
print("1. Medicine Information")
ch = input("Enter your choice: ")
condition = '1=1'
while ch not in '01234' or len(ch) != 1:
ch = input("Invalid choice! Please enter again: ")
if ch == '0':
return 0
elif ch == '1':
return '1'
elif ch == '2':
bar = input("Enter barcode of medicine: ")
while not bar.isdigit():
bar = input(
"Barcode should be an integer only! Please enter again: ")
condition = f"Barcode='{bar}'"
elif ch == '3':
name = input("Enter name of medicine: ")
condition = f"Name='{name}'"
elif ch == '4':
print("All columns are")
print(actions.get_columns("MedicineInfo"))
condition = input(
'Enter condition(<column_name><operator>"<value>"): ')
while True:
try:
cur.execute(f"select 1+2 from MedicineInfo where {condition}")
cur.fetchall()
break
except Exception as e:
print(e)
condition = input(
'Your condition had above error! \nEnter again(<column_name><operator>"<value>"): '
)
if ch in '234' and len(ch) == 1:
columns_all = actions.get_columns("MedicineInfo")
col_dict = {i + 1: columns_all[i] for i in range(len(columns_all))}
print(col_dict)
column = input("Which column no. do you want to update: ").lower()
while not column.isdigit() or int(column) not in col_dict:
column = input(
"Column no. you entered is not in option! Enter again: "
).lower()
column = col_dict[int(column)]
val = input("Enter value: ")
try:
actions.update("MedicineInfo", column, val, condition)
print("Updated records successfully...")
except Exception as e:
print("Your condition had below error!")
print(e)
def main ( ):
#print ''
log.setDebug( util.argv( _cmds['Debug'] ) )
actions.supress( util.argv( _cmds['Supress']) )
args = sys.argv
if len(args) == 1:
log.comment ("No arguments specified, listing your Gists. Try '%s help' if you need help." % util.fileName)
print ''
del args[0] # Delete the filename
cmd = None
log.debug ("Arguments " + str( args ))
#--------------------------------------------
# If args[0] is a command. We remove it from the list. args now contains only the command arguments
# else we keep as is and try to evaluate the command
#--------------------------------------------
if _hasCmd( args ):
cmd = args[0]
del args[0] # Delete the command. Arguments remaining are the options for each command
else:
cmd = _deriveCmd( args )
log.debug ("Adjusted cmd: " + str(cmd))
log.debug ("Adjusted arguments " + str( args ))
#--------------------------------------------
# Handle commands
#--------------------------------------------
if cmd == None:
_printNoMatch()
elif cmd in (_cmds['Help']):
actions.help()
elif cmd in (_cmds['List']):
actions.list()
elif cmd in (_cmds['Token']):
actions.updateCredentials()
elif cmd in (_cmds['View']):
if len(args) == 1:
actions.view( args[0] )
elif len(args) == 2:
actions.view( args[0], fileName=args[1])
elif cmd in (_cmds['Download']):
if len(args) == 2:
actions.get( args[0], path=args[1] )
elif len(args) == 3:
actions.get( args[0], fileName=args[1], path=args[2] )
elif cmd in (_cmds['New']):
# Each option will prompt for public/pvt and description. In silent mode, assumes private and no description.
if len(args) == 0:
actions.new()
elif len(args) == 1:
# create File
# create Content
if util.isFileOrDir(args[0]) == True:
actions.new( filename = args[0] )
else:
actions.new( content = args[0] )
elif len(args) == 2:
# create Boolean and File
# create Boolean and Content
# create Description and File
# create Description and Content
if util.parseBool( args[0] ) != None:
if util.isFileOrDir(args[1]) == True:
actions.new( public=util.parseBool( args[0] ), filename=args[1] )
else:
actions.new( public=util.parseBool( args[0] ), content=args[1] )
else:
if util.isFileOrDir(args[1]) == True:
actions.new( description=args[0], filename=args[1] )
else:
actions.new( description=args[0], content=args[1] )
elif len(args) == 3 and util.parseBool( args[0] ) != None:
# create Boolean, Description and File
# create Boolean, Description and Content
if util.isFileOrDir(args[2]) == True:
actions.new( public=util.parseBool( args[0] ), description=args[1], filename=args[2] )
else:
actions.new( public=util.parseBool( args[0] ), description=args[1], content=args[2] )
else:
_printNoMatch()
elif cmd in (_cmds['Append']):
# Each option will prompt for public/pvt and description.
if len(args) == 0:
_printNoMatch()
elif len(args) == 2:
# append: id File
# append: id Content
if util.isFileOrDir(args[1]) == True:
actions.append( args[0], filename=args[1] )
else:
actions.append( args[0], content=args[1] )
elif len(args) == 3:
# append: id Description File
# append: id Description Content
if util.isFileOrDir(args[2]) == True:
actions.append( args[0], description=args[1], filename=args[2] )
else:
actions.append( args[0], description=args[1], content=args[2] )
else:
actions.append( args[0] )
elif cmd in (_cmds['Update']):
# Each option will prompt for public/pvt and description.
if len(args) == 0:
_printNoMatch()
elif len(args) == 2:
# append: id File
# append: id Content
if util.isFileOrDir(args[1]) == True:
actions.update( args[0], filename=args[1] )
else:
actions.update( args[0], content=args[1] )
elif len(args) == 3:
# append: id Description File
# append: id Description Content
if util.isFileOrDir(args[2]) == True:
actions.update( args[0], description=args[1], filename=args[2] )
else:
actions.update( args[0], description=args[1], content=args[2] )
else:
actions.update( args[0] )
elif cmd in (_cmds['Delete']):
actions.delete( args[0] )
elif cmd in (_cmds['Backup']):
_printNoImpl()
actions.backup( )
elif cmd in (_cmds['Search']):
_printNoImpl()
actions.search( )
else:
_printNoMatch()
log.debug ("Done.")
print ''