Python count_seqs Examples

Example #1

    def test_count_seqs(self):
        test_seqs = [
            ">a b", "aattggcc", ">b.xyz stuff", "asdasd", ">c", "qweasd",
            ">d.foo", "qweasdasd"
        ]

        obs = count_seqs(iter(test_seqs))
        exp = 4
        self.assertEqual(obs, exp)
        obs = count_seqs(iter(test_seqs), subset=['b', 'c', 'foo'])
        exp = 2
        self.assertEqual(obs, exp)

Example #2

File: test_util.py Project: Pratap5387/American-Gut

    def test_count_seqs(self):
        test_seqs = [">a b",
                     "aattggcc",
                     ">b.xyz stuff",
                     "asdasd",
                     ">c",
                     "qweasd",
                     ">d.foo",
                     "qweasdasd"]

        obs = count_seqs(iter(test_seqs))
        exp = 4
        self.assertEqual(obs, exp)
        obs = count_seqs(iter(test_seqs), subset=['b', 'c', 'foo'])
        exp = 2
        self.assertEqual(obs, exp)