Python trim_fasta Examples

Programming Language: Python

Namespace/Package Name: americangut.util

Method/Function: trim_fasta

Examples at hotexamples.com: 2

Python trim_fasta - 2 examples found. These are the top rated real world Python examples of americangut.util.trim_fasta extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: test_util.py Project: Pratap5387/American-Gut

    def test_trim_fasta(self):
        infasta = StringIO(test_fasta)

        # Trim length 10
        expected = (">seq1\n"
                    "0123456789\n"
                    ">seq2\n"
                    "0123456789\n"
                    ">seq3\n"
                    "012345\n")
        outfasta = StringIO()
        trim_fasta(infasta, outfasta, 10)
        outfasta.seek(0)
        self.assertEqual(expected, outfasta.read())

Example #2

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    def test_trim_fasta(self):
        infasta = StringIO(test_fasta)

        # Trim length 10
        expected = (">seq1\n"
                    "0123456789\n"
                    ">seq2\n"
                    "0123456789\n"
                    ">seq3\n"
                    "012345\n")
        outfasta = StringIO()
        trim_fasta(infasta, outfasta, 10)
        outfasta.seek(0)
        self.assertEqual(expected, outfasta.read())