def pipeline_pubmed(self): xylose_article = Article(self._article, iso_format='iso 639-2') ppl = plumber.Pipeline(export_pubmed.SetupArticleSetPipe(), export_pubmed.XMLArticlePipe(), export_pubmed.XMLJournalPipe(), export_pubmed.XMLPublisherNamePipe(), export_pubmed.XMLJournalTitlePipe(), export_pubmed.XMLISSNPipe(), export_pubmed.XMLVolumePipe(), export_pubmed.XMLIssuePipe(), export_pubmed.XMLPubDatePipe(), export_pubmed.XMLReplacesPipe(), export_pubmed.XMLArticleTitlePipe(), export_pubmed.XMLFirstPagePipe(), export_pubmed.XMLLastPagePipe(), export_pubmed.XMLElocationIDPipe(), export_pubmed.XMLLanguagePipe(), export_pubmed.XMLAuthorListPipe(), export_pubmed.XMLPublicationTypePipe(), export_pubmed.XMLArticleIDListPipe(), export_pubmed.XMLHistoryPipe(), export_pubmed.XMLAbstractPipe(), export_pubmed.XMLClosePipe()) transformed_data = ppl.run(xylose_article, rewrap=True) return next(transformed_data)
def test_xmlauthorlist_pipe(self): pxml = ET.Element('ArticleSet') pxml.append(ET.Element('Article')) data = [self._article_meta, pxml] xmlarticle = export_pubmed.XMLAuthorListPipe() raw, xml = xmlarticle.transform(data) firstnames = [ f.find('FirstName').text for f in xml.findall('./Article/AuthorList/Author') ] lastnames = [ l.find('LastName').text for l in xml.findall('./Article/AuthorList/Author') ] self.assertEqual([ u'Mariangela Leal', u'Elaine Leandro', u'Daniele Araújo Campo', u'Eli Iola Gurgel', u'Francisco de Assis', u'Waleska Teixeira', u'Ricardo', u'Augusto A', u'Odilon Vanni de', u'Isabel Cristina' ], firstnames) self.assertEqual([ u'Cherchiglia', u'Machado', u'Szuster', u'Andrade', u'Acúrcio', u'Caiaffa', u'Sesso', u'Guerra Junior', u'Queiroz', u'Gomes' ], lastnames)