def pipeline_pubmed(self):
xylose_article = Article(self._article, iso_format='iso 639-2')
ppl = plumber.Pipeline(export_pubmed.SetupArticleSetPipe(),
export_pubmed.XMLArticlePipe(),
export_pubmed.XMLJournalPipe(),
export_pubmed.XMLPublisherNamePipe(),
export_pubmed.XMLJournalTitlePipe(),
export_pubmed.XMLISSNPipe(),
export_pubmed.XMLVolumePipe(),
export_pubmed.XMLIssuePipe(),
export_pubmed.XMLPubDatePipe(),
export_pubmed.XMLReplacesPipe(),
export_pubmed.XMLArticleTitlePipe(),
export_pubmed.XMLFirstPagePipe(),
export_pubmed.XMLLastPagePipe(),
export_pubmed.XMLElocationIDPipe(),
export_pubmed.XMLLanguagePipe(),
export_pubmed.XMLAuthorListPipe(),
export_pubmed.XMLPublicationTypePipe(),
export_pubmed.XMLArticleIDListPipe(),
export_pubmed.XMLHistoryPipe(),
export_pubmed.XMLAbstractPipe(),
export_pubmed.XMLClosePipe())
transformed_data = ppl.run(xylose_article, rewrap=True)
return next(transformed_data)
def test_xmlauthorlist_pipe(self):
pxml = ET.Element('ArticleSet')
pxml.append(ET.Element('Article'))
data = [self._article_meta, pxml]
xmlarticle = export_pubmed.XMLAuthorListPipe()
raw, xml = xmlarticle.transform(data)
firstnames = [
f.find('FirstName').text
for f in xml.findall('./Article/AuthorList/Author')
]
lastnames = [
l.find('LastName').text
for l in xml.findall('./Article/AuthorList/Author')
]
self.assertEqual([
u'Mariangela Leal', u'Elaine Leandro', u'Daniele Araújo Campo',
u'Eli Iola Gurgel', u'Francisco de Assis', u'Waleska Teixeira',
u'Ricardo', u'Augusto A', u'Odilon Vanni de', u'Isabel Cristina'
], firstnames)
self.assertEqual([
u'Cherchiglia', u'Machado', u'Szuster', u'Andrade', u'Acúrcio',
u'Caiaffa', u'Sesso', u'Guerra Junior', u'Queiroz', u'Gomes'
], lastnames)