def upload_url(project_id): mail, key = get_credentials(config_file) serv = get_serv(config_file) f1 = os.path.join(samples_path, samples[4]) mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, url=serv + "/test_files?id=" + str(4), trackname="bed-test-renamed", extension='bed') t1 = mess1['track_id'] log('track_id', t1) assert mess1['message'] == u'Processing launched.' urls = "%s/test_files?id=%s %s/test_files?id=%s %s/test_files?id=%s" % ( serv, 1, serv, 2, serv, 8) mess2 = gdv.single_track(mail, key, serv_url=serv, extension='sql', project_id=project_id, url=urls) assert mess2['message'] == u'Processing launched.' return ['']
def upload_fsys(project_id): """ Upload track on GDV via fsys """ mail, key = get_credentials(config_file) serv = get_serv(config_file) f1 = os.path.join(samples_path, samples[3]) mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, fsys=f1) t1 = mess1['track_id'] log('track_id', t1) assert mess1['message'] == u'Processing launched.' f2 = os.path.join(samples_path, samples[6]) mess2 = gdv.single_track(mail, key, serv_url=serv, trackname="gtf-test-renamed", project_id=project_id, fsys=f2) t2 = mess2['track_id'] log('track_id', t2) assert mess2['message'] == u'Processing launched.' return [t1, t2]
def upload_url(project_id): mail, key = get_credentials(config_file) serv = get_serv(config_file) f1 = os.path.join(samples_path, samples[4]) mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, url=serv+"/test_files?id=" + str(4), trackname="bed-test-renamed", extension='bed') t1 = mess1['track_id'] log('track_id', t1) assert mess1['message'] == u'Processing launched.' urls = "%s/test_files?id=%s %s/test_files?id=%s %s/test_files?id=%s" % (serv, 1, serv, 2, serv, 8) mess2 = gdv.single_track(mail, key, serv_url=serv, extension='sql', project_id=project_id, url=urls) assert mess2['message'] == u'Processing launched.' return ['']