def upload_url(project_id):
mail, key = get_credentials(config_file)
serv = get_serv(config_file)
f1 = os.path.join(samples_path, samples[4])
mess1 = gdv.single_track(mail,
key,
serv_url=serv,
assembly_id=12,
url=serv + "/test_files?id=" + str(4),
trackname="bed-test-renamed",
extension='bed')
t1 = mess1['track_id']
log('track_id', t1)
assert mess1['message'] == u'Processing launched.'
urls = "%s/test_files?id=%s %s/test_files?id=%s %s/test_files?id=%s" % (
serv, 1, serv, 2, serv, 8)
mess2 = gdv.single_track(mail,
key,
serv_url=serv,
extension='sql',
project_id=project_id,
url=urls)
assert mess2['message'] == u'Processing launched.'
return ['']
def upload_fsys(project_id):
"""
Upload track on GDV via fsys
"""
mail, key = get_credentials(config_file)
serv = get_serv(config_file)
f1 = os.path.join(samples_path, samples[3])
mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, fsys=f1)
t1 = mess1['track_id']
log('track_id', t1)
assert mess1['message'] == u'Processing launched.'
f2 = os.path.join(samples_path, samples[6])
mess2 = gdv.single_track(mail,
key,
serv_url=serv,
trackname="gtf-test-renamed",
project_id=project_id,
fsys=f2)
t2 = mess2['track_id']
log('track_id', t2)
assert mess2['message'] == u'Processing launched.'
return [t1, t2]
def upload_url(project_id):
mail, key = get_credentials(config_file)
serv = get_serv(config_file)
f1 = os.path.join(samples_path, samples[4])
mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, url=serv+"/test_files?id=" + str(4), trackname="bed-test-renamed", extension='bed')
t1 = mess1['track_id']
log('track_id', t1)
assert mess1['message'] == u'Processing launched.'
urls = "%s/test_files?id=%s %s/test_files?id=%s %s/test_files?id=%s" % (serv, 1, serv, 2, serv, 8)
mess2 = gdv.single_track(mail, key, serv_url=serv, extension='sql', project_id=project_id, url=urls)
assert mess2['message'] == u'Processing launched.'
return ['']
def upload_fsys(project_id):
"""
Upload track on GDV via fsys
"""
mail, key = get_credentials(config_file)
serv = get_serv(config_file)
f1 = os.path.join(samples_path, samples[3])
mess1 = gdv.single_track(mail, key, serv_url=serv, assembly_id=12, fsys=f1)
t1 = mess1['track_id']
log('track_id', t1)
assert mess1['message'] == u'Processing launched.'
f2 = os.path.join(samples_path, samples[6])
mess2 = gdv.single_track(mail, key, serv_url=serv, trackname="gtf-test-renamed", project_id=project_id, fsys=f2)
t2 = mess2['track_id']
log('track_id', t2)
assert mess2['message'] == u'Processing launched.'
return [t1, t2]