def _maybe_add_pizzly(algorithm, sample, out): pizzly_dir = dd.get_pizzly_dir(sample) if pizzly_dir: out.append({"path": pizzly_dir, "type": "directory", "ext": "pizzly"}) return out
def _maybe_add_arriba_files(algorithm, sample, out): pizzly_dir = dd.get_pizzly_dir(sample) arriba = dd.get_arriba(sample) if arriba: out.append({"path": arriba["fusions"], "type": "tsv", "ext": "arriba-fusions", "dir": "arriba"}) out.append({"path": arriba["discarded"], "type": "tsv", "ext": "arriba-discarded-fusions", "dir": "arriba"}) return out