def _maybe_add_pizzly(algorithm, sample, out):
pizzly_dir = dd.get_pizzly_dir(sample)
if pizzly_dir:
out.append({"path": pizzly_dir,
"type": "directory",
"ext": "pizzly"})
return out
def _maybe_add_pizzly(algorithm, sample, out):
pizzly_dir = dd.get_pizzly_dir(sample)
if pizzly_dir:
out.append({"path": pizzly_dir,
"type": "directory",
"ext": "pizzly"})
return out
def _maybe_add_arriba_files(algorithm, sample, out):
pizzly_dir = dd.get_pizzly_dir(sample)
arriba = dd.get_arriba(sample)
if arriba:
out.append({"path": arriba["fusions"],
"type": "tsv",
"ext": "arriba-fusions",
"dir": "arriba"})
out.append({"path": arriba["discarded"],
"type": "tsv",
"ext": "arriba-discarded-fusions",
"dir": "arriba"})
return out
