def test_parse_darkhorse(self):
"""Test functionality of parse_darkhorse
"""
output_candidate_genomes_fp = join(
self.working_dir, "output_candidate_genomes_fp")
output_exp = ("G2311_SE001,\tgi|557307555|ref|YP_008766893.1|\t140749"
"3\tShigella phage SfIV\tViruses;Caudovirales;Myovirida"
"e\t67.4\t100\t0.002\nG1250_SE001,\tgi|9630468|ref|NP_0"
"46899.1|\t40631\tEnterobacteria phage N15\tViruses;Cau"
"dovirales;Siphoviridae;N15likevirus\t79.4\t100\t0.002\n"
"G1252_SE001,\tgi|428782382|ref|YP_007112139.1|\t114714"
"4\tEnterobacteria phage HK225\tViruses;Caudovirales;Si"
"phoviridae;Lambdalikevirus\t88.2\t100\t0.002\nG1251_SE"
"001,\tgi|428782381|ref|YP_007112138.1|\t1147144\tEnter"
"obacteria phage HK225\tViruses;Caudovirales;Siphovirid"
"ae;Lambdalikevirus\t94.9\t100\t0.002")
with open(self.darkhorse_output_hgt_fp, 'r') as f:
output = parse_darkhorse(input_f=f,
output_fp=output_candidate_genomes_fp,
low_lpi=0.0,
high_lpi=0.6)
self.assertEqual(output, output_exp)
def test_parse_darkhorse(self):
"""Test functionality of parse_darkhorse
"""
input_f = "none.txt"
rt = parse_darkhorse(input_f)
self.assertEqual(rt, None)
def test_parse_darkhorse(self):
"""Test functionality of parse_darkhorse
"""
input_f = "none.txt"
rt = parse_darkhorse(input_f)
self.assertEqual(rt, None)
