biochem = Biochem(logger) # Initialize biochemistry object: cycle-number need to be passed.
#---------------------------------------------------------------------------------------
# FLUIDICS SUB-SYSTEM FUNCTIONS
#---------------------------------------------------------------------------------------
logger.info('*\t--> Started %s method execution - biochem_utils.py' % sys.argv[1])
method = (sys.argv[1]) # assign name of requested method
if method == 'capping_1':
biochem.capping_1()
elif method == 'capping_2':
biochem.capping_2()
elif method == 'clean_flowcell':
print "INFO\t *\t--> Please, enter reagent and cleaning iteration numbers separated by single space [integers]: ",
v = sys.stdin.readline().strip().split(' ') # use stdin explicitly and remove trailing newline character
biochem.clean_flowcell(int(v[0]), int(v[1]))
elif method == 'clean_flowcell_and_syringe':
print "INFO\t *\t--> Please, enter the number of cleaning iterations [integer]: ",
iteration = int(sys.stdin.readline().strip()) # use stdin explicitly and remove trailing newline character
biochem.clean_flowcell_and_syringe(iteration)
elif method == 'clean_fluidics_system':
print "INFO\t *\t--> Please, enter the number of cleaning iterations [integer]: ",
iteration = int(sys.stdin.readline().strip()) # use stdin explicitly and remove trailing newline character
biochem.clean_fluidics_system(iteration)
