Example #1
0
    # usage: biochem_utils.py fcnum prime_reagent_block V4flag
    # V4flag==1 to prime V4, V4flag==0 to not prime V4
    elif method == 'prime_reagent_block':
        biochem.primeReagentBlock(int(sys.argv[1]), int(sys.argv[3]))


    # usage: biochem_utils.py fcnum react reagentValve reagentPort temp time 
    # bufferBeforeFlag bufferAfterFlag
    # OR biochem_utils.py fcnum react reagentValve reagentPort temp time 
    # bufferBeforeFlag bufferAfterFlag bufferPort bufferVolume
    # depending on whether a reaction buffer is used before/after the reagent 
    # to prime/flush the lines
    elif method == 'react':
        if(len(sys.argv) == 9):
            biochem.react(sys.argv[3], int(sys.argv[4]), int(sys.argv[5]), \
                int(sys.argv[6]), int(sys.argv[7]), int(sys.argv[8]))
        else:
            biochem.react(sys.argv[3], int(sys.argv[4]), int(sys.argv[5]), \
                int(sys.argv[6]), int(sys.argv[7]), int(sys.argv[8]), \
                int(sys.argv[9]), int(sys.argv[10]))


    # usage: biochem_utils.py fcnum strip_chem [V1..V3]
    elif method == 'strip_chem':
        biochem.strip_chem('V4', 5)


    # usage: biochem_utils.py fcnum syringe_pump_init
    elif method == 'syringe_pump_init':
        biochem.syringe_pump_init()