Python RunSnpDetection.min_four_samples Examples

Example #1

File: test_bohra.py Project: tauqeer9/bohra

def test_notfour_isolates():
    '''
        return false when less than 4 rows are present
        '''
    with patch.object(RunSnpDetection, "__init__", lambda x: None):
        detect_obj = RunSnpDetection()
        tab = pandas.DataFrame({'A': [1, 2, 3]})
        assert detect_obj.min_four_samples(tab)

Example #2

File: test_bohra.py Project: tauqeer9/bohra

def test_four_isolates():
    '''
        confirm that min of 4 rows are present
        '''
    with patch.object(RunSnpDetection, "__init__", lambda x: None):
        detect_obj = RunSnpDetection()
        tab = pandas.DataFrame({'A': [1, 2, 3, 4]})
        assert detect_obj.min_four_samples(tab) == False