def _install_tools(env, tools_conf=None): """ Install tools needed for Galaxy along with tool configuration directories needed by Galaxy. """ if not tools_conf: tools_conf = _load_tools_conf(env) if _read_boolean(env, "galaxy_install_dependencies", False): # Need to ensure the install dir exists and is owned by env.galaxy_user _setup_install_dir(env) _install_applications(env, tools_conf) if _read_boolean(env, "galaxy_install_r_packages", False): _install_r_packages(tools_conf)