def pfold_parser(lines): """Parser for Pfold output """ tree,lines = tree_struct_sep(lines) result = column_parser(lines) return result
def test_pfold_output(self): """Test for column_parser for pfold format""" tree,lines = tree_struct_sep(self.pfold_out) self.assertEqual(tree,PFOLD_tree) obs = column_parser(lines) self.assertEqual(obs,self.pfold_exp)
def test_pfold_output(self): """Test for column_parser for pfold format""" tree, lines = tree_struct_sep(self.pfold_out) self.assertEqual(tree, PFOLD_tree) obs = column_parser(lines) self.assertEqual(obs, self.pfold_exp)
def foldalign_parser(lines, col=True): """Parser foldalign output""" data = lines if col: return column_parser(data) else: return find_struct(data)
def foldalign_parser(lines,col=True): """Parser foldalign output""" data = lines if col: return column_parser(data) else: return find_struct(data)
def test_foldalign_output(self): """Test for column_parser for foldalign format""" obs = column_parser(self.foldalign_out) self.assertEqual(obs,self.foldalign_exp)
def test_foldalign_output(self): """Test for column_parser for foldalign format""" obs = column_parser(self.foldalign_out) self.assertEqual(obs, self.foldalign_exp)