def pfold_parser(lines):
"""Parser for Pfold output
"""
tree,lines = tree_struct_sep(lines)
result = column_parser(lines)
return result
def test_pfold_output(self):
"""Test for column_parser for pfold format"""
tree,lines = tree_struct_sep(self.pfold_out)
self.assertEqual(tree,PFOLD_tree)
obs = column_parser(lines)
self.assertEqual(obs,self.pfold_exp)
def pfold_parser(lines):
"""Parser for Pfold output
"""
tree,lines = tree_struct_sep(lines)
result = column_parser(lines)
return result
def test_pfold_output(self):
"""Test for column_parser for pfold format"""
tree, lines = tree_struct_sep(self.pfold_out)
self.assertEqual(tree, PFOLD_tree)
obs = column_parser(lines)
self.assertEqual(obs, self.pfold_exp)
def foldalign_parser(lines, col=True):
"""Parser foldalign output"""
data = lines
if col:
return column_parser(data)
else:
return find_struct(data)
def foldalign_parser(lines,col=True):
"""Parser foldalign output"""
data = lines
if col:
return column_parser(data)
else:
return find_struct(data)
def test_foldalign_output(self):
"""Test for column_parser for foldalign format"""
obs = column_parser(self.foldalign_out)
self.assertEqual(obs,self.foldalign_exp)
def test_foldalign_output(self):
"""Test for column_parser for foldalign format"""
obs = column_parser(self.foldalign_out)
self.assertEqual(obs, self.foldalign_exp)
