def test_get_frequency_3(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', 'AAAAAAA'),
Sequence('bar', 'AAAAAAA'),
Sequence('cho', 'AAAAAAA')
]:
sequence_file.add(s)
self.assertEqual([0, 0, 0, 0, 0, 0, 0],
sequence_file.get_frequency("X"))
def test_get_frequency_2(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', '-------'),
Sequence('bar', '-------'),
Sequence('cho', '-------')
]:
sequence_file.add(s)
self.assertEqual([3, 3, 3, 3, 3, 3, 3],
sequence_file.get_frequency("-"))
def test_get_frequency_1(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', 'AAAAAAA'),
Sequence('bar', 'A-AAAA-'),
Sequence('cho', '--AAA--')
]:
sequence_file.add(s)
self.assertEqual([1, 2, 0, 0, 0, 1, 2],
sequence_file.get_frequency("X"))
def test_get_frequency_3(self):
sequence_file = SequenceFile("test")
for s in [Sequence("foo", "AAAAAAA"), Sequence("bar", "AAAAAAA"), Sequence("cho", "AAAAAAA")]:
sequence_file.add(s)
self.assertEqual([0, 0, 0, 0, 0, 0, 0], sequence_file.get_frequency("X"))
def test_get_frequency_2(self):
sequence_file = SequenceFile("test")
for s in [Sequence("foo", "-------"), Sequence("bar", "-------"), Sequence("cho", "-------")]:
sequence_file.add(s)
self.assertEqual([3, 3, 3, 3, 3, 3, 3], sequence_file.get_frequency("-"))
def test_get_frequency_1(self):
sequence_file = SequenceFile("test")
for s in [Sequence("foo", "AAAAAAA"), Sequence("bar", "A-AAAA-"), Sequence("cho", "--AAA--")]:
sequence_file.add(s)
self.assertEqual([1, 2, 0, 0, 0, 1, 2], sequence_file.get_frequency("X"))