def test_get_frequency_3(self): sequence_file = SequenceFile('test') for s in [ Sequence('foo', 'AAAAAAA'), Sequence('bar', 'AAAAAAA'), Sequence('cho', 'AAAAAAA') ]: sequence_file.add(s) self.assertEqual([0, 0, 0, 0, 0, 0, 0], sequence_file.get_frequency("X"))
def test_get_frequency_2(self): sequence_file = SequenceFile('test') for s in [ Sequence('foo', '-------'), Sequence('bar', '-------'), Sequence('cho', '-------') ]: sequence_file.add(s) self.assertEqual([3, 3, 3, 3, 3, 3, 3], sequence_file.get_frequency("-"))
def test_get_frequency_1(self): sequence_file = SequenceFile('test') for s in [ Sequence('foo', 'AAAAAAA'), Sequence('bar', 'A-AAAA-'), Sequence('cho', '--AAA--') ]: sequence_file.add(s) self.assertEqual([1, 2, 0, 0, 0, 1, 2], sequence_file.get_frequency("X"))
def test_get_frequency_3(self): sequence_file = SequenceFile("test") for s in [Sequence("foo", "AAAAAAA"), Sequence("bar", "AAAAAAA"), Sequence("cho", "AAAAAAA")]: sequence_file.add(s) self.assertEqual([0, 0, 0, 0, 0, 0, 0], sequence_file.get_frequency("X"))
def test_get_frequency_2(self): sequence_file = SequenceFile("test") for s in [Sequence("foo", "-------"), Sequence("bar", "-------"), Sequence("cho", "-------")]: sequence_file.add(s) self.assertEqual([3, 3, 3, 3, 3, 3, 3], sequence_file.get_frequency("-"))
def test_get_frequency_1(self): sequence_file = SequenceFile("test") for s in [Sequence("foo", "AAAAAAA"), Sequence("bar", "A-AAAA-"), Sequence("cho", "--AAA--")]: sequence_file.add(s) self.assertEqual([1, 2, 0, 0, 0, 1, 2], sequence_file.get_frequency("X"))