def test_create_blast_from_file(self):
file_var = "NotExist"
e_var = 1e-50
batch_size = 20
outfile_var = "foolname"
setting = Setting()
setting.add_all(blast_e_value=e_var, blast_wdir=self.Blast_dir,
blast_infile=file_var, blast_outfile=outfile_var,
blast_batch_size=batch_size,
)
with self.assertRaises(IOError):
RunBlast.create_blast_from_file(setting_class=setting)
infile_var = self.Blast_dir + "bIn"
setting.add("blast_infile", infile_var)
blast = RunBlast.create_blast_from_file(setting)
self.assertEqual(blast.results, dict())
self.record_index = SeqIO.index(infile_var, "fasta")
for key in self.record_index:
# print key
self.assertEqual(str(self.record_index[key].seq), str(blast.record_index[key].seq))
self.assertEqual(str(self.record_index[key].id), str(blast.record_index[key].id))
self.assertEqual(blast.e_threshold, e_var)
self.assertEqual(blast.batch_size, batch_size)
