def onSave(self, event):
if len(self.data) == 0:
wx.MessageBox("Nothing to save yet!", "Save Last Scan", style=wx.OK)
return
dlg = wx.FileDialog(None, "Save Last Scan", os.getcwd(), "", "*.*", wx.SAVE)
if dlg.ShowModal() == wx.ID_OK:
filename = dlg.GetPath()
# set new working directory
directory = os.path.split(filename)
if not os.path.isdir(filename):
os.chdir(directory[0])
# save averaged data
cutils.saveFSRS(filename, self.data)
# save intermediate steps
if len(self.intdata) > 1:
tmp = filename.split(".")
if len(tmp) > 1:
basename = tmp[:-1].join()
ext = "." + tmp[-1]
else:
basename = filename
ext = ""
for i in range(len(self.intdata)):
cutils.saveFSRS("%s_%d%s" % (basename, i, ext), self.intdata[i])
dlg.Destroy()
def onUpdate(self, val, grexc, step, set):
# prepare data
A, B, C = val
mode = self.getPropertyByLabel("mode").getValue()
if mode == 0:
A = -np.log(A)
elif mode == 1:
A = -np.log10(A)
# save data
filename = cutils.formatFSRSFilename(mode, self.basename, step, set, grexc)
cutils.saveFSRS(filename, [A, B, C])
# update progress bar
self.getPropertyByLabel("progress").setValue(next(self.progress_iterator))
self.getPropertyByLabel("status").setValue("position %.0ffs, set %d/%d" % (step, set, self.Nsets))
# plot in window
if isinstance(self.plotWnd, wx.Frame):
if self.plotInit:
self.plotWnd.upperPlotCanvas.setLine(0, np.arange(len(A)), A)
self.plotWnd.lowerPlotCanvas.setLine(0, np.arange(len(A)), B)
self.plotWnd.lowerPlotCanvas.setLine(1, np.arange(len(A)), C)
else:
self.plotInit = True
self.plotWnd.upperPlotCanvas.addLine(np.arange(len(A)), A)
self.plotWnd.lowerPlotCanvas.addLine(np.arange(len(A)), B)
self.plotWnd.lowerPlotCanvas.addLine(np.arange(len(A)), C)
else:
# user closed the plotWindow -> stop thread
self.onStart()
def onStart(self, event=None):
if self.running:
module.Experiment.stop(self)
else:
if self.plotWnd is not None:
self.plotWnd.Destroy()
self.plotInit = False
self.plotID = 0
self.plotWnd = FSRSplot.PlotFrame(None, title=time.strftime("XC Scan"), size=(640, 640))
self.plotWnd.plotCanvas.tightx = True
self.plotWnd.plotCanvas.tighty = True
self.plotWnd.Show()
self.data = []
self.points = []
self.bg = []
s_type = self.getPropertyByLabel("type").getValue()
s_ccd = self.cameras[self.getPropertyByLabel("camera").getValue()]
s_axis = self.axes[self.getPropertyByLabel("axis").getValue()]
s_shutter = self.shutters[self.getPropertyByLabel("shutter").getValue()]
s_frames = int(self.getPropertyByLabel("frames").getValue())
self.points = cutils.prepareScanPoints(self)
self.s_points_iterator = itertools.cycle(self.points)
self.progress_iterator = itertools.cycle(np.arange(len(self.points) * 1 + 1) * 100 / (len(self.points) * 1))
self.getPropertyByLabel("progress").setValue(next(self.progress_iterator))
self.running = True
module.Experiment.start(self, ScanThread, type=s_type, ccd=s_ccd, axis=s_axis, shutter=s_shutter, frames=s_frames, points=self.points, sets=1)
def onSave(self, event):
if len(self.data) == 0:
wx.MessageBox("Nothing to save yet!", "Save Last Scan", style=wx.OK)
return
dlg = wx.FileDialog(None, "Save Last Scan", os.getcwd(), "", "*.*", wx.SAVE)
if dlg.ShowModal() == wx.ID_OK:
filename = dlg.GetPath()
# set new working directory
directory = os.path.split(filename)
if not os.path.isdir(filename):
os.chdir(directory[0])
cutils.saveFSRS(filename, self.data)
dlg.Destroy()
def onStart(self, event=None):
if self.running:
module.Experiment.stop(self)
else:
if self.plotWnd is not None:
self.plotWnd.Destroy()
self.plotInit = False
self.plotWnd = FSRSplot.DualPlotFrame(None, title=time.strftime("FSRS Scan"), size=(800, 600))
self.plotWnd.upperPlotCanvas.tightx = True
self.plotWnd.lowerPlotCanvas.tightx = True
self.plotWnd.lowerPlotCanvas.setXLabel("Wavenumber (px)")
self.plotWnd.lowerPlotCanvas.setYLabel("Counts")
s_type = self.getPropertyByLabel("type").getValue()
if s_type == 0:
self.plotWnd.upperPlotCanvas.setYLabel("Gain")
elif s_type == 1:
self.plotWnd.upperPlotCanvas.setYLabel("OD")
else:
self.plotWnd.upperPlotCanvas.setYLabel("dT / T0")
self.plotWnd.Show()
s_ccd = self.cameras[self.getPropertyByLabel("camera").getValue()]
s_axis = self.axes[self.getPropertyByLabel("axis").getValue()]
s_shutter = self.shutters[self.getPropertyByLabel("shutter").getValue()]
s_frames = int(self.getPropertyByLabel("frames").getValue())
s_ref = self.inputs[self.getPropertyByLabel("take ref.").getValue() - 1] if self.getPropertyByLabel("take ref.").getValue() >= 1 else None
s_points = cutils.prepareScanPoints(self)
self.Nsteps = len(s_points) + 1
s_sets = int(self.getPropertyByLabel("sets").getValue())
self.Nsets = s_sets
self.s_points_iterator = itertools.cycle(s_points)
self.progress_iterator = itertools.cycle(np.linspace(0, 100, len(s_points) * s_sets).astype(int))
self.getPropertyByLabel("progress").setValue(0)
self.basename = os.path.join(self.getPropertyByLabel("path").getValue(), self.getPropertyByLabel("basename").getValue())
# save a timepoints file
np.savetxt(self.basename + "_timepoints.txt", np.sort(s_points))
module.Experiment.start(self, ScanThread, type=s_type, ccd=s_ccd, axis=s_axis, shutter=s_shutter, frames=s_frames, points=s_points, sets=s_sets, reference=s_ref)
def __init__(self):
module.Experiment.__init__(self)
self.name = "FSRS Scan"
# stores the camera module
self.cameras = []
self.axes = []
self.shutters = []
self.inputs = []
# stores the plotting window stuff
self.plotWnd = None
self.plotInit = False
# when creating the properties, you should create a start/stop button with the label "Start"
prop = []
prop.append({"label": "Camera", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "Type", "type": "choice", "choices": ["FSRS", "TA", "T/T0"], "value": 0})
prop.append({"label": "# of Frames", "type": "spin", "value": 8000, "info": (2, 20000)})
prop.append({"label": "Axis", "type": "choice", "choices": [], "value": 0})
prop = cutils.appendStageParameters(prop)
prop.append({"label": "Shutter", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "Take Ref.", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "# of Sets", "type": "spin", "value": 1, "info": (1, 1000)})
prop.append({"label": "Basename", "type": "input", "value": ""})
prop.append({"label": "Output Path", "type": "file", "value": os.getcwd(), "info": "path"})
prop.append({"label": "Progress", "type": "progress", "value": 0})
prop.append({"label": "Status", "type": "label", "value": ""})
prop.append({"label": "Start", "type": "button", "value": "Scan", "event": "onStart"})
# convert dictionary to properties object
self.parsePropertiesDict(prop)
self.data = np.array([])
self.Nsteps = 0
self.Nsets = 0
def __init__(self):
module.Experiment.__init__(self)
self.name = "DAQ Scan"
self.daqs = []
self.plotWnd = None
self.plotID = -1
self.data = []
self.points = []
# when creating the properties, you should create a start/stop button with the label "Start"
prop = []
prop.append({"label": "DAQ", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "Axis", "type": "choice", "choices": [], "value": 0})
prop = cutils.appendStageParameters(prop)
prop.append({"label": "Save Scan", "type": "button", "value": "Save", "event": "onSave"})
prop.append({"label": "Progress", "type": "progress", "value": 0})
prop.append({"label": "Start", "type": "button", "value": "Scan", "event": "onStart"})
self.parsePropertiesDict(prop)
def onStart(self, event=None):
if self.running:
module.Experiment.stop(self)
else:
self.data = []
self.points = []
if self.plotWnd is not None:
self.plotWnd.Destroy()
self.plotID = -1
self.plotWnd = FSRSplot.PlotFrame(None, title="DAQScan", size=(640, 480))
self.plotWnd.Show()
s_axis = self.axes[self.getPropertyByLabel("axis").getValue()]
s_daq = self.daqs[self.getPropertyByLabel("daq").getValue()]
self.points = cutils.prepareScanPoints(self)
self.progress_iterator = itertools.cycle(np.arange(len(self.points) + 1) * 100 / (len(self.points)))
self.getPropertyByLabel("progress").setValue(next(self.progress_iterator))
module.Experiment.start(self, DAQScanThread, daq=s_daq, axis=s_axis, points=self.points)
def __init__(self):
module.Experiment.__init__(self)
self.name = "XC Scan"
# stores the camera module
self.cameras = []
self.axes = []
self.shutters = []
# stores the 2d data, each column is a new timepoint
self.data = []
self.points = []
self.bg = []
# stores the plotting window stuff
self.plotWnd = None
self.plotInit = False
self.plotID = 0
self.running = False
# when creating the properties, you should create a start/stop button with the label "Start"
prop = []
prop.append({"label": "Camera", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "Type", "type": "choice", "choices": ["FSRS", "TA", "T/T0", "Kerr"], "value": 3})
prop.append({"label": "# of Frames", "type": "spin", "value": 100, "info": (2, 20000)})
prop.append({"label": "Axis", "type": "choice", "choices": [], "value": 0})
prop = cutils.appendStageParameters(prop, -300, 300, 20)
prop.append({"label": "Shutter", "type": "choice", "choices": [], "value": 0})
prop.append({"label": "Save Last", "type": "button", "value": "Save", "event": "onSave"})
prop.append({"label": "Progress", "type": "progress", "value": 0})
prop.append({"label": "Start", "type": "button", "value": "Scan", "event": "onStart"})
prop.append({"label": "Fit", "type": "button", "value": "Fit", "event": "onFit"})
self.parsePropertiesDict(prop)
self.data = np.array([])
def onAxisRangeChange(self, event):
cutils.onAxisRangeChange(self, event)
