Python read Examples

Example #1

File: test_msf_io.py Project: snehamitra/NPLB

 def test_parse_msf2(self):
     f = testdata_stream("cox2.msf")
     seqs = msf_io.read(f)
     self.assertEquals(len(seqs), 5)
     self.assertEquals(seqs[1].name, "cox2_crifa")
     self.assertEquals(len(seqs[1]), 166)
     self.assertEquals(str(seqs[2][0:10]), 'MSFILTFWMI')

Example #2

File: test_msf_io.py Project: snehamitra/NPLB

 def test_parse_msf(self):
     f = testdata_stream("dna.msf")
     seqs = msf_io.read(f)
     self.assertEquals(len(seqs), 10)
     self.assertEquals(seqs[1].name, "Carp")
     self.assertEquals(len(seqs[1]), 705)
     self.assertEquals(str(seqs[2][0:10]), 'ATGGCCAACC')

Example #3

File: test_msf_io.py Project: SaswatiSadual/NPLB

 def test_parse_msf2(self) :
     f = testdata_stream("cox2.msf")
     seqs = msf_io.read(f)
     self.assertEquals(len(seqs), 5)
     self.assertEquals(seqs[1].name, "cox2_crifa")
     self.assertEquals(len(seqs[1]), 166)
     self.assertEquals( str(seqs[2][0:10]), 'MSFILTFWMI')

Example #4

File: test_msf_io.py Project: SaswatiSadual/NPLB

 def test_parse_msf(self) :
     f = testdata_stream("dna.msf")
     seqs = msf_io.read(f)
     self.assertEquals(len(seqs), 10)
     self.assertEquals(seqs[1].name, "Carp")
     self.assertEquals(len(seqs[1]), 705)
     self.assertEquals( str(seqs[2][0:10]), 'ATGGCCAACC')

Example #5

File: test_msf_io.py Project: snehamitra/NPLB

 def test_parse_1beo(self):
     f = testdata_stream("1beo.msf")
     seqs = msf_io.read(f)

Example #6

File: test_msf_io.py Project: ghuls/weblogo

 def test_parse_1beo(self):
     f = testdata_stream("1beo.msf")
     seqs = msf_io.read(f)
     f.close()