def test_parse_msf2(self): f = testdata_stream("cox2.msf") seqs = msf_io.read(f) self.assertEquals(len(seqs), 5) self.assertEquals(seqs[1].name, "cox2_crifa") self.assertEquals(len(seqs[1]), 166) self.assertEquals(str(seqs[2][0:10]), 'MSFILTFWMI')
def test_parse_msf(self): f = testdata_stream("dna.msf") seqs = msf_io.read(f) self.assertEquals(len(seqs), 10) self.assertEquals(seqs[1].name, "Carp") self.assertEquals(len(seqs[1]), 705) self.assertEquals(str(seqs[2][0:10]), 'ATGGCCAACC')
def test_parse_msf2(self) : f = testdata_stream("cox2.msf") seqs = msf_io.read(f) self.assertEquals(len(seqs), 5) self.assertEquals(seqs[1].name, "cox2_crifa") self.assertEquals(len(seqs[1]), 166) self.assertEquals( str(seqs[2][0:10]), 'MSFILTFWMI')
def test_parse_msf(self) : f = testdata_stream("dna.msf") seqs = msf_io.read(f) self.assertEquals(len(seqs), 10) self.assertEquals(seqs[1].name, "Carp") self.assertEquals(len(seqs[1]), 705) self.assertEquals( str(seqs[2][0:10]), 'ATGGCCAACC')
def test_parse_1beo(self): f = testdata_stream("1beo.msf") seqs = msf_io.read(f)
def test_parse_1beo(self): f = testdata_stream("1beo.msf") seqs = msf_io.read(f) f.close()