def spec_data_rebin(self):
di, ti = self.centre
tside = int(250 * 1.)
dside = 300
delta_t = self.data.delta_t
delta_dm = self.data.delta_dm
ntime = self.data.spec_data.shape[1]
nfreq = self.data.nfreq
freq = self.data.freq
max_freq = np.max(freq)
the_dm = self.data.dm[di]
disp_ind = self.data.disp_ind
spec_data_delay = np.zeros((nfreq, tside), dtype=float)
for ii in range(nfreq):
delay_ind = int(round((disp_delay(freq[ii], the_dm, disp_ind)
- disp_delay(max_freq, the_dm, disp_ind)) / delta_t))
start_i = ti - tside // 2 + delay_ind
stop_i = start_i + tside
start_o = 0
stop_o = tside
if start_i < 0:
start_o = -start_i
start_i = 0
if stop_i > ntime:
stop_o += (ntime - stop_i)
stop_i = ntime
if (stop_i > start_i) and (stop_o > start_o):
spec_data_delay[ii,start_o:stop_o] = self.data.spec_data[ii,
start_i:stop_i]
rebin_factor_freq = 64
rebin_factor_time = 1
spec_data_delay.shape = (
nfreq // rebin_factor_freq,
rebin_factor_freq,
tside // rebin_factor_time,
rebin_factor_time,
)
spec_data_rebin = np.mean(np.mean(spec_data_delay, 3), 1)
return spec_data_rebin
def plot_spec(self):
di, ti = self.centre
delta_t = self.data.delta_t
delta_dm = self.data.delta_dm
ntime = self.data.spec_data.shape[1]
nfreq = self.data.nfreq
freq = self.data.freq
max_freq = np.max(freq)
the_dm = self.data.dm[di]
duration = self._duration
spectrum = np.zeros(nfreq, dtype=float)
disp_ind = self.data.disp_ind
for ii in range(nfreq):
f = freq[ii]
delay_ind = int(round((disp_delay(freq[ii], the_dm, disp_ind)
- disp_delay(max_freq, the_dm, disp_ind)) / delta_t))
# Jon's centre index seems to be the last bin in the window.
start = ti + delay_ind - duration + 1
stop = start + duration
spectrum[ii] = np.mean(self.data.spec_data[ii,start:stop])
self.fluence = sum(spectrum)
colors = ['blue','red','darkgreen','orange']
rebin_factors = [ 4**ii for ii in range(4) ]
for ii, rfact in enumerate(rebin_factors):
spectrum_r = np.reshape(spectrum, (nfreq // rfact, rfact))
plt.plot(
freq[rfact//2::rfact],
np.mean(spectrum_r, 1),
colors[ii % len(colors)],
)
plt.ylabel("Fluence")
plt.xlabel("Frequency (MHz)")
def plot_spec(self):
di, ti = self.centre
delta_t = self.data.delta_t
delta_dm = self.data.delta_dm
ntime = self.data.spec_data.shape[1]
nfreq = self.data.nfreq
freq = self.data.freq
max_freq = np.max(freq)
the_dm = self.data.dm[di]
duration = self._duration
spectrum = np.zeros(nfreq, dtype=float)
disp_ind = self.data.disp_ind
for ii in range(nfreq):
f = freq[ii]
delay_ind = int(round((disp_delay(freq[ii], the_dm, disp_ind)
- disp_delay(max_freq, the_dm, disp_ind)) / delta_t))
# Jon's centre index seems to be the last bin in the window.
start = ti + delay_ind - duration + 1
stop = start + duration
spectrum[ii] = np.mean(self.data.spec_data[ii,start:stop])
self.fluence = sum(spectrum)
colors = ['blue','red','darkgreen','orange']
rebin_factors = [ 4**ii for ii in range(4) ]
for ii, rfact in enumerate(rebin_factors):
spectrum_r = np.reshape(spectrum, (nfreq // rfact, rfact))
plt.plot(
freq[rfact//2::rfact],
np.mean(spectrum_r, 1),
colors[ii % len(colors)],
)
plt.ylabel("Fluence")
plt.xlabel("Frequency (MHz)")
def inject_events(self, t0, data):
"""Assumes that subsequent calls always happen with later t0,
although blocks may overlap."""
ntime = data.shape[1]
time = np.arange(ntime) * self._delta_t + t0
f_max = max(self._freq)
f_min = min(self._freq)
f_mean = np.mean(self._freq)
overlap_events = [
e for e in self._simulated_events if e.arrival_time(f_min) > t0
]
new_events = []
mu = self._rate * self._delta_t
events_per_bin = nprand.poisson(mu, ntime)
events_per_bin[time <= self._last_time_processed] = 0
event_inds, = np.where(events_per_bin)
for ind in event_inds:
for ii in range(events_per_bin[ind]):
dm, fluence, width, spec_ind, disp_ind = \
self.draw_event_parameters()
msg = ("Injecting simulated event at time = %5.2f, DM = %6.1f,"
" fluence = %f, width = %f, spec_ind = %3.1f, disp_ind"
" = %3.1f.")
logger.info(
msg % (time[ind], dm, fluence, width, spec_ind, disp_ind))
t = disp_delay(f_min, dm, disp_ind)
t = t - disp_delay(f_mean, dm, disp_ind)
t = t + time[ind]
e = Event(t, f_mean, dm, fluence, width, spec_ind, disp_ind)
new_events.append(e)
for e in overlap_events + new_events:
e.add_to_data(t0, self._delta_t, self._freq, data)
self._simulated_events = self._simulated_events + new_events
self._last_time_processed = time[-1]
def inject_events(self, t0, data):
"""Assumes that subsequent calls always happen with later t0,
although blocks may overlap."""
ntime = data.shape[1]
time = np.arange(ntime) * self._delta_t + t0
f_max = max(self._freq)
f_min = min(self._freq)
f_mean = np.mean(self._freq)
overlap_events = [e for e in self._simulated_events if e.arrival_time(f_min) > t0]
new_events = []
mu = self._rate * self._delta_t
events_per_bin = nprand.poisson(mu, ntime)
events_per_bin[time <= self._last_time_processed] = 0
event_inds, = np.where(events_per_bin)
for ind in event_inds:
for ii in range(events_per_bin[ind]):
dm, fluence, width, spec_ind, disp_ind = self.draw_event_parameters()
msg = (
"Injecting simulated event at time = %5.2f, DM = %6.1f,"
" fluence = %f, width = %f, spec_ind = %3.1f, disp_ind"
" = %3.1f."
)
logger.info(msg % (time[ind], dm, fluence, width, spec_ind, disp_ind))
t = disp_delay(f_min, dm, disp_ind)
t = t - disp_delay(f_mean, dm, disp_ind)
t = t + time[ind]
e = Event(t, f_mean, dm, fluence, width, spec_ind, disp_ind)
new_events.append(e)
for e in overlap_events + new_events:
e.add_to_data(t0, self._delta_t, self._freq, data)
self._simulated_events = self._simulated_events + new_events
self._last_time_processed = time[-1]
def arrival_time(self, f):
t = disp_delay(f, self._dm, self._disp_ind)
t = t - disp_delay(self._f_ref, self._dm, self._disp_ind)
return self._t_ref + t
def plot_freq(self):
di, ti = self.centre
tside = int(250 * 1.)
dside = 300
delta_t = self.data.delta_t
delta_dm = self.data.delta_dm
ntime = self.data.spec_data.shape[1]
nfreq = self.data.nfreq
freq = self.data.freq
max_freq = np.max(freq)
the_dm = self.data.dm[di]
disp_ind = self.data.disp_ind
spec_data_delay = np.zeros((nfreq, tside), dtype=float)
for ii in range(nfreq):
delay_ind = int(round((disp_delay(freq[ii], the_dm, disp_ind)
- disp_delay(max_freq, the_dm, disp_ind)) / delta_t))
start_i = ti - tside // 2 + delay_ind
stop_i = start_i + tside
start_o = 0
stop_o = tside
if start_i < 0:
start_o = -start_i
start_i = 0
if stop_i > ntime:
stop_o -= (ntime - stop_i)
stop_i = ntime
spec_data_delay[ii,start_o:stop_o] = self.data.spec_data[ii,
start_i:stop_i]
rebin_factor_freq = 64
rebin_factor_time = 1
spec_data_delay.shape = (
nfreq // rebin_factor_freq,
rebin_factor_freq,
tside // rebin_factor_time,
rebin_factor_time,
)
spec_data_rebin = np.mean(np.mean(spec_data_delay, 3), 1)
image_mean = np.mean(spec_data_rebin)
image_std = np.std(spec_data_rebin)
vmin = image_mean - 1 * image_std
vmax = image_mean + 5 * image_std
tstart = (ti - tside // 2) * delta_t
tstop = tstart + tside * delta_t
plt.imshow(
spec_data_rebin,
extent=[tstart, tstop, freq[-1], freq[0]],
vmin=vmin,
vmax=vmax,
aspect='auto',
cmap = cm.Blues
)
plt.xlabel("time (s)")
plt.ylabel("Frequency (MHz)")
plt.colorbar()
def plot_freq(self):
di, ti = self.centre
tside = int(250 * 1.)
dside = 300
delta_t = self.data.delta_t
delta_dm = self.data.delta_dm
ntime = self.data.spec_data.shape[1]
nfreq = self.data.nfreq
freq = self.data.freq
max_freq = np.max(freq)
the_dm = self.data.dm[di]
disp_ind = self.data.disp_ind
spec_data_delay = np.zeros((nfreq, tside), dtype=float)
for ii in range(nfreq):
delay_ind = int(round((disp_delay(freq[ii], the_dm, disp_ind)
- disp_delay(max_freq, the_dm, disp_ind)) / delta_t))
start_i = ti - tside // 2 + delay_ind
stop_i = start_i + tside
start_o = 0
stop_o = tside
if start_i < 0:
start_o = -start_i
start_i = 0
if stop_i > ntime:
stop_o += (ntime - stop_i)
stop_i = ntime
if (stop_i > start_i) and (stop_o > start_o):
spec_data_delay[ii,start_o:stop_o] = self.data.spec_data[ii,
start_i:stop_i]
rebin_factor_freq = 64
rebin_factor_time = 1
spec_data_delay.shape = (
nfreq // rebin_factor_freq,
rebin_factor_freq,
tside // rebin_factor_time,
rebin_factor_time,
)
spec_data_rebin = np.mean(np.mean(spec_data_delay, 3), 1)
image_mean = np.mean(spec_data_rebin)
image_std = np.std(spec_data_rebin)
vmin = image_mean - 1 * image_std
vmax = image_mean + 5 * image_std
tstart = (ti - tside // 2) * delta_t
tstop = tstart + tside * delta_t
plt.imshow(
spec_data_rebin,
extent=[tstart, tstop, freq[-1], freq[0]],
vmin=vmin,
vmax=vmax,
aspect='auto',
cmap = cm.Blues
)
plt.xlabel("time (s)")
plt.ylabel("Frequency (MHz)")
plt.colorbar()
def arrival_time(self, f):
t = disp_delay(f, self._dm, self._disp_ind)
t = t - disp_delay(self._f_ref, self._dm, self._disp_ind)
return self._t_ref + t