def test_remove_project(self):
epidb = DeepBlueClient(address="localhost", port=31415)
self.init_base(epidb)
sample_id = self.sample_ids[0]
regions_data = helpers.load_bed("hg19_chr1_1")
format = data_info.EXPERIMENTS["hg19_chr1_1"]["format"]
res, projects = epidb.list_projects(self.admin_key)
# adding two experiments with the same data should work
res, eid = epidb.add_experiment("test_exp1", "hg19", "Methylation",
sample_id, "tech1", projects[0][1],
"desc1", regions_data, format, None,
self.admin_key)
self.assertSuccess(res, eid)
res = epidb.remove(projects[0][0], self.admin_key)
self.assertFailure(res)
res = epidb.remove(eid, self.admin_key)
self.assertSuccess(res)
res = epidb.remove(projects[0][0], self.admin_key)
self.assertSuccess(res)
def test_set_project_publictest_project(self):
epidb = DeepBlueClient(address="localhost", port=31415)
self.init(epidb)
res = epidb.add_project(
"ENCODE", "The ENCODE Project: ENCyclopedia Of DNA Elements",
self.admin_key)
self.assertSuccess(res)
res = epidb.add_project("Other", "Some other project", self.admin_key)
self.assertSuccess(res)
res, projects = epidb.list_projects(self.admin_key)
self.assertSuccess(res, projects)
self.assertEqual(len(projects), 2)
project_names = [x[1] for x in projects]
self.assertTrue("ENCODE" in project_names)
self.assertTrue("Other" in project_names)
def test_set_project_public(self):
epidb = DeepBlueClient(address="localhost", port=31415)
self.init_base(epidb)
res = epidb.add_project("Other", "Some other project", self.admin_key)
self.assertSuccess(res)
s, user = epidb.add_user("user", "email", "institution",
self.admin_key)
(user_id, user_key) = user
self.assertSuccess(s)
status, projects = epidb.list_projects(self.admin_key)
self.assertEqual(
projects,
[['p1', 'ENCODE'], ['p2', 'Mouse ENCODE'], ['p3', 'Other']])
status, projects = epidb.list_projects(user_key)
self.assertEqual(projects, [])
epidb.set_project_public("ENCODE", True, self.admin_key)
status, projects = epidb.list_projects(user_key)
self.assertEqual(projects, [["p1", "ENCODE"]])
epidb.set_project_public("ENCODE", False, self.admin_key)
status, projects = epidb.list_projects(user_key)
self.assertEqual(projects, [])
epidb.set_project_public("Mouse ENCODE", True, self.admin_key)
epidb.set_project_public("ENCODE", True, self.admin_key)
status, projects = epidb.list_projects(user_key)
self.assertEqual(projects, [['p1', 'ENCODE'], ['p2', 'Mouse ENCODE']])
epidb.set_project_public("Other", True, self.admin_key)
status, projects = epidb.list_projects(user_key)
self.assertEqual(
projects,
[['p1', 'ENCODE'], ['p2', 'Mouse ENCODE'], ['p3', 'Other']])
