def test_remove_project(self): epidb = DeepBlueClient(address="localhost", port=31415) self.init_base(epidb) sample_id = self.sample_ids[0] regions_data = helpers.load_bed("hg19_chr1_1") format = data_info.EXPERIMENTS["hg19_chr1_1"]["format"] res, projects = epidb.list_projects(self.admin_key) # adding two experiments with the same data should work res, eid = epidb.add_experiment("test_exp1", "hg19", "Methylation", sample_id, "tech1", projects[0][1], "desc1", regions_data, format, None, self.admin_key) self.assertSuccess(res, eid) res = epidb.remove(projects[0][0], self.admin_key) self.assertFailure(res) res = epidb.remove(eid, self.admin_key) self.assertSuccess(res) res = epidb.remove(projects[0][0], self.admin_key) self.assertSuccess(res)
def test_set_project_publictest_project(self): epidb = DeepBlueClient(address="localhost", port=31415) self.init(epidb) res = epidb.add_project( "ENCODE", "The ENCODE Project: ENCyclopedia Of DNA Elements", self.admin_key) self.assertSuccess(res) res = epidb.add_project("Other", "Some other project", self.admin_key) self.assertSuccess(res) res, projects = epidb.list_projects(self.admin_key) self.assertSuccess(res, projects) self.assertEqual(len(projects), 2) project_names = [x[1] for x in projects] self.assertTrue("ENCODE" in project_names) self.assertTrue("Other" in project_names)
def test_set_project_public(self): epidb = DeepBlueClient(address="localhost", port=31415) self.init_base(epidb) res = epidb.add_project("Other", "Some other project", self.admin_key) self.assertSuccess(res) s, user = epidb.add_user("user", "email", "institution", self.admin_key) (user_id, user_key) = user self.assertSuccess(s) status, projects = epidb.list_projects(self.admin_key) self.assertEqual( projects, [['p1', 'ENCODE'], ['p2', 'Mouse ENCODE'], ['p3', 'Other']]) status, projects = epidb.list_projects(user_key) self.assertEqual(projects, []) epidb.set_project_public("ENCODE", True, self.admin_key) status, projects = epidb.list_projects(user_key) self.assertEqual(projects, [["p1", "ENCODE"]]) epidb.set_project_public("ENCODE", False, self.admin_key) status, projects = epidb.list_projects(user_key) self.assertEqual(projects, []) epidb.set_project_public("Mouse ENCODE", True, self.admin_key) epidb.set_project_public("ENCODE", True, self.admin_key) status, projects = epidb.list_projects(user_key) self.assertEqual(projects, [['p1', 'ENCODE'], ['p2', 'Mouse ENCODE']]) epidb.set_project_public("Other", True, self.admin_key) status, projects = epidb.list_projects(user_key) self.assertEqual( projects, [['p1', 'ENCODE'], ['p2', 'Mouse ENCODE'], ['p3', 'Other']])