Python BioGrid.settestonly Examples

Example #1

File: test_biogrid.py Project: tegar9000/dipper-1

class BioGridTestCase(SourceTestCase):
    def setUp(self):
        self.source = BioGrid('rdf_graph', True)
        self.source.settestonly(True)
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

    def test_interactor_to_gene_curie(self):
        self.assertEqual(
            'NCBIGene:3645446',
            self.source._interactor_to_gene_curie(
                'entrez gene/locuslink:3645446'))
        self.assertEqual(
            'BIOGRID:4383875',
            self.source._interactor_to_gene_curie('biogrid:4383875'))
        self.assertEqual(
            'UniProtKB:P0DTD2',
            self.source._interactor_to_gene_curie('uniprot/swiss-prot:P0DTD2'))

        self.assertEqual(None,
                         self.source._interactor_to_gene_curie('NOTAGENEID'))

Example #2

File: test_biogrid.py Project: sgml/dipper

class BioGridTestCase(SourceTestCase):
    def setUp(self):
        self.source = BioGrid('rdf_graph', True)
        self.source.settestonly(True)
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

Example #3

File: test_biogrid.py Project: TomConlin/dipper

class BioGridTestCase(SourceTestCase):

    def setUp(self):
        self.source = BioGrid('rdf_graph', True)
        self.source.settestonly(True)
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

Example #4

File: test_biogrid.py Project: d3borah/dipper

class BioGridTestCase(SourceTestCase):

    def setUp(self):
        self.source = BioGrid()
        self.source.settestonly(True)
        self.source.test_ids = self._get_conf()['test_ids']['gene']
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

Example #5

File: test_biogrid.py Project: putmantime/dipper

class BioGridTestCase(SourceTestCase):

    def setUp(self):
        self.source = BioGrid('rdf_graph', True)
        self.source.settestonly(True)
        self.source.test_ids = self._get_conf()['test_ids']['gene']
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return