class BioGridTestCase(SourceTestCase):
def setUp(self):
self.source = BioGrid('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
def test_interactor_to_gene_curie(self):
self.assertEqual(
'NCBIGene:3645446',
self.source._interactor_to_gene_curie(
'entrez gene/locuslink:3645446'))
self.assertEqual(
'BIOGRID:4383875',
self.source._interactor_to_gene_curie('biogrid:4383875'))
self.assertEqual(
'UniProtKB:P0DTD2',
self.source._interactor_to_gene_curie('uniprot/swiss-prot:P0DTD2'))
self.assertEqual(None,
self.source._interactor_to_gene_curie('NOTAGENEID'))
class BioGridTestCase(SourceTestCase):
def setUp(self):
self.source = BioGrid('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
class BioGridTestCase(SourceTestCase):
def setUp(self):
self.source = BioGrid('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
class BioGridTestCase(SourceTestCase):
def setUp(self):
self.source = BioGrid()
self.source.settestonly(True)
self.source.test_ids = self._get_conf()['test_ids']['gene']
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
class BioGridTestCase(SourceTestCase):
def setUp(self):
self.source = BioGrid('rdf_graph', True)
self.source.settestonly(True)
self.source.test_ids = self._get_conf()['test_ids']['gene']
self._setDirToSource()
return
def tearDown(self):
self.source = None
return