Python hamming_distance Examples

Example #1

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_no_difference_between_identical_strands(self):
     self.assertEqual(0, hamming_distance('GGACTGA', 'GGACTGA'))

Example #2

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_ignores_extra_length_on_original_strand_when_longer(self):
     self.assertEqual(
         5, hamming_distance('GACTACGGACAGGGTAGGGAAT', 'GACATCGCACACC'))

Example #3

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_no_difference_between_empty_strands(self):
     self.assertEqual(0, hamming_distance('', ''))

Example #4

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_larger_distance(self):
     self.assertEqual(2, hamming_distance('ACCAGGG', 'ACTATGG'))

Example #5

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_ignores_extra_length_on_other_strand_when_longer(self):
     self.assertEqual(3, hamming_distance('AAACTAGGGG', 'AGGCTAGCGGTAGGAC'))

Example #6

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_hamming_distance_in_off_by_one_strand(self):
     self.assertEqual(
         19,
         hamming_distance('GGACGGATTCTGACCTGGACTAATTTTGGGG',
                          'AGGACGGATTCTGACCTGGACTAATTTTGGGG'))

Example #7

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_small_hamming_distance_in_middle_somewhere(self):
     self.assertEqual(1, hamming_distance('GGACG', 'GGTCG'))

Example #8

File: point_mutations_test.py Project: TFarla/xpython

 def test_no_difference_between_empty_strands(self):
     self.assertEqual(0, hamming_distance('', ''))

Example #9

File: point_mutations_test.py Project: tstirrat15/xpython

 def test_complete_hamming_distance_in_small_strand(self):
     self.assertEqual(3, hamming_distance('ACT', 'GGA'))

Example #10

File: point_mutations_test.py Project: TFarla/xpython

 def test_ignores_extra_length_on_other_strand_when_longer(self):
     self.assertEqual(3, hamming_distance('AAACTAGGGG', 'AGGCTAGCGGTAGGAC'))

Example #11

File: point_mutations_test.py Project: TFarla/xpython

 def test_ignores_extra_length_on_original_strand_when_longer(self):
     self.assertEqual(5, hamming_distance('GACTACGGACAGGGTAGGGAAT',
                                          'GACATCGCACACC'))

Example #12

File: point_mutations_test.py Project: TFarla/xpython

 def test_larger_distance(self):
     self.assertEqual(2, hamming_distance('ACCAGGG', 'ACTATGG'))

Example #13

File: point_mutations_test.py Project: TFarla/xpython

 def test_small_hamming_distance_in_middle_somewhere(self):
     self.assertEqual(1, hamming_distance('GGACG', 'GGTCG'))

Example #14

File: point_mutations_test.py Project: TFarla/xpython

 def test_hamming_distance_in_off_by_one_strand(self):
     self.assertEqual(19,
                      hamming_distance('GGACGGATTCTGACCTGGACTAATTTTGGGG',
                                       'AGGACGGATTCTGACCTGGACTAATTTTGGGG'))

Example #15

File: point_mutations_test.py Project: TFarla/xpython

 def test_complete_hamming_distance_in_small_strand(self):
     self.assertEqual(3, hamming_distance('ACT', 'GGA'))

Example #16

File: point_mutations_test.py Project: TFarla/xpython

 def test_no_difference_between_identical_strands(self):
     self.assertEqual(0, hamming_distance('GGACTGA', 'GGACTGA'))