Example #1
0
def run_unafold_bad_permissions_test():
    # If we do not have permissions to write to the UNAfold
    # directory, we need to trhow a runtimeError
    temp_dir = tempfile.mkdtemp()
    subprocess.call(["chmod", "a-w", temp_dir])
    try:
        weboutput.run_unafold(temp_dir, "ATTA")
    finally:
        shutil.rmtree(temp_dir)
Example #2
0
def run_unafold_missing_binary_test():
    # Verify that we throw a runtime error if unafold.pl
    # binary is missing.
    bad_command = "/tmp/does_not_exist"
    temp_dir = tempfile.mkdtemp()
    try:
        weboutput.run_unafold(os.path.join("/tmp", "ATTAA"), "ATTAA", bad_command )
    finally:
        shutil.rmtree(temp_dir)
Example #3
0
def run_unafold_missing_unafolddir_test():
    # If we call unafold and temp_directory
    # does not exist, then it should throw a
    # RuntimeError
    temp_dir = "/tmp/does_not_exist"
    weboutput.run_unafold(temp_dir, "ATATA")