def xtest_wrt_function_dirichlet_boundary():
mesh = UnitSquareMesh(10, 10)
V = FunctionSpace(mesh, "CG", 1)
u = TrialFunction(V)
u_ = Function(V)
v = TestFunction(V)
class Up(SubDomain):
def inside(self, x, on_boundary):
return near(x[1], 1)
class Down(SubDomain):
def inside(self, x, on_boundary):
return near(x[1], 0)
class Left(SubDomain):
def inside(self, x, on_boundary):
return near(x[0], 0)
class Right(SubDomain):
def inside(self, x, on_boundary):
return near(x[0], 1)
left = Left()
right = Right()
up = Up()
down = Down()
boundary = MeshFunction("size_t", mesh, mesh.geometric_dimension() - 1)
boundary.set_all(0)
up.mark(boundary, 1)
down.mark(boundary, 2)
ds = Measure("ds", subdomain_data=boundary)
bc_func = project(Expression("sin(x[1])", degree=1), V)
bc1 = DirichletBC(V, bc_func, left)
bc2 = DirichletBC(V, 2, right)
bc = [bc1, bc2]
g1 = Constant(2)
g2 = Constant(1)
f = Function(V)
f.vector()[:] = 10
def J(bc):
a = inner(grad(u), grad(v)) * dx
L = inner(f, v) * dx + inner(g1, v) * ds(1) + inner(g2, v) * ds(2)
solve(a == L, u_, [bc, bc2])
return assemble(u_**2 * dx)
_test_adjoint_function_boundary(J, bc1, bc_func)
def test_solver_ident_zeros():
"""
Test using ident zeros to restrict half of the domain
"""
from fenics_adjoint import (UnitSquareMesh, Function, assemble, solve,
project, Expression, DirichletBC)
mesh = UnitSquareMesh(10, 10)
cf = MeshFunction("size_t", mesh, mesh.topology().dim(), 0)
top_half().mark(cf, 1)
ff = MeshFunction("size_t", mesh, mesh.topology().dim() - 1, 0)
top_boundary().mark(ff, 1)
dx = Measure("dx", domain=mesh, subdomain_data=cf)
V = FunctionSpace(mesh, "CG", 1)
u, v = TrialFunction(V), TestFunction(V)
a = inner(grad(u), grad(v)) * dx(1)
w = Function(V)
with stop_annotating():
w.assign(project(Expression("x[0]", degree=1), V))
rhs = w**3 * v * dx(1)
A = assemble(a, keep_diagonal=True)
A.ident_zeros()
b = assemble(rhs)
bc = DirichletBC(V, Constant(1), ff, 1)
bc.apply(A, b)
uh = Function(V)
solve(A, uh.vector(), b, "umfpack")
J = assemble(inner(uh, uh) * dx(1))
Jhat = ReducedFunctional(J, Control(w))
with stop_annotating():
w1 = project(Expression("x[0]*x[1]", degree=2), V)
results = taylor_to_dict(Jhat, w, w1)
assert (min(results["R0"]["Rate"]) > 0.95)
assert (min(results["R1"]["Rate"]) > 1.95)
assert (min(results["R2"]["Rate"]) > 2.95)
def _test_wrt_function_dirichlet_boundary():
mesh = IntervalMesh(10, 0, 1)
V = FunctionSpace(mesh, "Lagrange", 1)
c = Constant(1)
u = TrialFunction(V)
u_ = Function(V)
v = TestFunction(V)
f = project(Expression("1", degree=1), V)
bc = DirichletBC(V, f, "on_boundary")
def J(bc):
a = inner(grad(u), grad(v)) * dx
L = c * v * dx
solve(a == L, u_, bc)
return assemble(u_**2 * dx)
_test_adjoint_function_boundary(J, bc, f)
A = fenics.FunctionSpace(mesh, "CG", 1) # control function space
U_h = fenics.VectorElement("CG", mesh.ufl_cell(), 2)
P_h = fenics.FiniteElement("CG", mesh.ufl_cell(), 1)
W = fenics.FunctionSpace(mesh, U_h * P_h) # mixed Taylor-Hood function space
# Define the boundary condition on velocity
(x, y) = ufl.SpatialCoordinate(mesh)
l = 1.0 / 6.0 # noqa: E741
gbar = 1.0
cond1 = ufl.And(ufl.gt(y, (1.0 / 4 - l / 2)), ufl.lt(y, (1.0 / 4 + l / 2)))
val1 = gbar * (1 - (2 * (y - 0.25) / l) ** 2)
cond2 = ufl.And(ufl.gt(y, (3.0 / 4 - l / 2)), ufl.lt(y, (3.0 / 4 + l / 2)))
val2 = gbar * (1 - (2 * (y - 0.75) / l) ** 2)
inflow_outflow = ufl.conditional(cond1, val1, ufl.conditional(cond2, val2, 0))
inflow_outflow_bc = fenics_adjoint.project(inflow_outflow, W.sub(0).sub(0).collapse())
solve_templates = (fenics_adjoint.Function(A),)
assemble_templates = (fenics_adjoint.Function(W), fenics_adjoint.Function(A))
@build_jax_fem_eval(solve_templates)
def forward(rho):
"""Solve the forward problem for a given fluid distribution rho(x)."""
w = fenics_adjoint.Function(W)
(u, p) = fenics.split(w)
(v, q) = fenics.TestFunctions(W)
inner, grad, dx, div = ufl.inner, ufl.grad, ufl.dx, ufl.div
F = (
alpha(rho) * inner(u, v) * dx